SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp36941_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing-splicing_factor_8_[Bombyx_mori]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000386 F second spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0030623 F U5 snRNA binding
GO:0044822 F RNA binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:0071356 P cellular response to tumor necrosis factor
GO:0097157 F pre-mRNA intronic binding
Transcript
Level		FPKM:0.41 TPM:0.30
ORF EntryO_ErmoMG14991_3prime_partial:A_ErmoMG_comp36941_c0_seq3
Sequence
(Nucleotide)
CACAAACGTAGTAATTTGTGTTCATGATGTTTGTAAATTAATGTTTATCATTGTGTAATT
ACTGTTTCTATGTAACACGACACATATACAGTTTTAACATCGAAAAAAAGGCGGTCAGCC
ATGTCGCTGCCGCCTTACCTGCTGGGGCCCAACCCATGGGCCACGATGATGGCGCAGCAG
CAATTGGCGGCGGCACAGCAAGCGGCGCTTCAGGCGCACGCGGCGGCCGCAGCTGCTGCG
CCTCCAGTGCCGCCAGCACAGCCACCTAAACCATCTCACGTACCCGAAGAGAAGATAAAA
GAAAAAACTCAAAAATGGCTCCAACTACAATCAAAACGATTTGCGGAGAAACGCAAGTTT
GGATTTGTGGATGCTCAAAAAGAAGACATGCCTCCGGAGCACATAAGAAAGATTATAAGG
GACCATGGGGACATGACAAGTCGTAAATATCGCCACGACAAACGAGTCTACCTCGGTGCT
TTAAAATATATGCCCCACGCGGTCATGAAGCTTTTGGAAAACATGCCTATGCCATGGGAG
CAGATCAGGGATGTCAAAGTTCTGTACCACATCACAGGGGCTATAACATTTGTTAATGAA
ATACCTTGGGTTATTGAGCCAGTTTACATAGCACAGTGGGGTACAATGTGGATCATGATG
CGTCGTGAGAAACGCGACCGTAGACATTTCAAACGTATGAGGTTCCCACCTTTTGATGAT
GAAGAACCTCCTCTTGATTACGCTGATAACGTATTAGACGTGGAACCGTTGGAGCCCATA
CAGATTGAGTTAGATCCCGAAGAAGATGGAGCTGTGGCATCCTGGTTCTATGACCACAAA
CCACTGATTGACACCAAACATGTAAACGGATCAACCTATCGCCGCTGGAATTTGACACTT
CCTCAAATGGCAACACTGTATCGTTTGGCAAACCAGCTACTAACAGATTTGGTAGACGAC
AATTACTTTTATCTCTTTGATTCAAAGAGTTTCTTCACCGCAAAAGCTTTAAATATGGCC
ATACCTGGTGGACCAAAGTTTGAACCGCTTGTGAAGGACAATTCTGCTGGCGATGAAGAC
TGGAACGAGTTCAATGACATCAATAAGATTATAATTCGTCAGCCGATTAGAACAGAATAC
AGGATTGCGTTCCCCTATCTGTACAACAATCTGCCGCACTTTGTACAGTTGTCTTGGTAT
CACACGCCAAATGTTATCTACATCAAAACTGAAGATCCTGATCTACCCGCGTTTTACTTT
GATCCACTCATCAACCCAATTTCTCATCGCCATTCGGTGAAGTCTCTTGAGCCAGTCCCA
GATGAGGAAGATTTTGCGCTACCAGATGAAGTATCACCATTCTTACAGGAGACTGCCCTC
TACACTGATAACACAGCAAATGGTATTGCTCTGCTATGGGCACCAAGGCCATTCAGCATG
AGATCGGGTCGTACTCGACGCGCCATAGACGTACCTCTGGTGAAGACTTGGTACAAAGAA
CATTGCCCACCCGGTCAACCTGTCAAAGTCCGTGTTTCATATCAGAAATTGCTTAAGTAC
TATGTTCTTAATTCTTTGAAACATAGACCCCCCAAACCACAGAAGAAGAGGTACCTATTC
CGCTCATTTAAATCAACGAAGTTCTTCCAAACTACAACCCTAGACTGGGTCGAAGCTGGG
CTTCAAGTTTGTCGTCAAGGTTACAACATGCTCAACCTTCTCATTCATCGCAAGAACTTG
AACTATCTTCATTTGGACTACAATTTCAACTTGAAACCAGTGAAAACTCTTACTACAAAG
GAAAGAAAGAAGTCTCGGTTCGGAAATGCCTTCCACTTGTGTCGCGAGATACTTCGTTTA
ACGAAGCTTATAGTTGATTCACACGTGCAATATCGTCTCAACAACGTGGACTCATTCCAA
CTAGCTGATGGACTTCAGTACATTTTTGCTCATGTTGGGCAACTGACTGGCATGTACCGT
TACAAGTATAAACTTATGAGACAGATCAGAATGTGCAAGGATTTGAAGCATTTAATATAC
TACCGATTCAACACTGGACCAGTATCAAAAGGGCCGGGTTGTGGTTTCTGGGCACCAGGA
TGGCGAGTTTGGTTGTTCTTCATGCGAGGAATAACTCCATTGCTGGAACGTTGGCTTGGC
AATCTACTGTCCAGACAGTTTGAAGGAAGACATTCTAAAGGTGTAGCAAAGACGGTTACG
AAGCAGCGTGTCGAATCTCACTTCGATCTTGAACTGCGTGCTTCAGTCATGCATGACATT
GTCGACATGATGCCCGAAGGTATCAAACAGAACAAAGCAAGAACTATATTGCAACATTTG
TCTGAGGCCTGGAGATGCTGGAAAGCAAACATTCCGTGGAAAGTACCTGGACTTCCAACT
CCAATAGAGAACATGATACTCCGATACGTAAAGATGAAGGCAGATTGGTGGACCAATACT
GCTCATTACAACAGAGAGCGTATCCGTCGCGGTGCCACCGTCGATAAAACCGTCTGCAAG
AAGAACCTCGGTAGACTGACACGATTGTACTTGAAAGCGGAACAAGAGAGACAGCACAAC
TATCTTAAGGATGGTCCCTACATTTCTCCTGAAGAAGCAGTAGCAATCTACACCACAACA
GTGCACTGGCTAGAATCGAGACGATTCGCCCCTATACCATTCCCACCTCTGTCATACAAA
CACGATACCAAACTTCTGATTTTGGCTCTCGAAAGATTAAAGGAAGCTTATAGTTTTGCT
GACTCAAAGAACTTTCAGAGAGGTTGGCATAGAGTTTA
(2798 bp)

- SilkBase 1999-2023 -