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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp36941_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing-splicing_factor_8_[Bombyx_mori]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000386 F second spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0030623 F U5 snRNA binding
GO:0044822 F RNA binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:0071356 P cellular response to tumor necrosis factor
GO:0097157 F pre-mRNA intronic binding
Transcript
Level		FPKM:18.88 TPM:13.89
ORF EntryO_ErmoMG14990_5prime_partial:A_ErmoMG_comp36941_c0_seq2
Sequence
(Nucleotide)
TTTTCATAATAAATTGAAATTTTATTTGTTTTATACGTACAGAAGAAATATTCTTATACA
CTACACACTGACACAAAAATAAAACAAGATATCATACGGCGATTGAATTTCTTAAGTATA
TCTTGACCATTCCTTATTCCTTAGTCATCAAGCAAACAAGTCTTCTCTATCGGCGGCTAT
TGTTGGTGCTGCTACATCTTCCATGGCAGCAAAGTTCATGAAATGCGCTGGTCTGTGAAC
TTCGTGGTAGAACTCACGAGGGTTGCCTAGTTGAACACCGTATTTCATGTTCGGATCGTG
TCGTACACCCATAAAGTTGTAATTCCAACTGCCCTGCGATGGCACCATGAAGTATCCCAA
AAATCTATCAGAGAGCAACATCTGTACTCTTTCATAGTGACTGGGTAAGTAGCCTTTAGG
ATTATTACCCCGATCTGTGTTCCTGACACCCCATTCATAACCGCTCGGTGTAAGTTTGTA
TGCAGTTAGTGAACATGATCCAGGTGTGAAAGAACAAGTAATGATTATTGTCTTCTCGCC
ATCCCATGAGGAGTTGTCAGACATGATTTTGGCATGAGTTGTAATATCCTGTGGTGACAA
TTGTGGCAATTCATTAGGCTGTGTGTGCATCCATCCTAGAGGCTGTAAATGTGCGAGTGC
TGGATGTTTTGGAAGATGTTTGGGCAGATGTACTTGTTGATGTGTACCCCACTGCGGAGG
TAGGACTGCACAGTGCACTTCACGAACCATTGGATTGTCACTCGGAGAAGTACCAAAGAG
GTAACATGCAATCTGTGCTCTCAAATCAGAAATGGTGACGAATTTCTTGAGTAAGTTCTT
TGGTAGGATATAAGTGTATCCACTTTCCTTGATATCGTCAGAACTCACGTAGATGTGGTT
TGTACGAAGATGTAGGTTCGTCGCTGATATTGCACGAACACGCCACTCCGTCTTGGAACT
GAATGTCTGAGACTCGTAGTTACTGGTTGTCGATGTTATGATCTCGTCGCCGTGTTTGTT
GACAGTGCGGGTGGTGGTCGCCGTGAGTTGACTTTGTTCCTTGCTCTGCTTCTCGATTTC
AGCGATCTGTTGTCGCTGGGCTGACGGAGCCGATATCTCCATACCGAGGATAATGTCACG
GATTTCCGATTGTGTAAGCGAAGCCACATTGACGTTATTCTTCTTTCCATAATCAGCTAA
TATAAGGTCTTTTAGTTGGACTTCAACTTTGATCCAGTCATCGTCACTTAAAGTGGGCCA
GATGTGGTGAGGCTCGGTGAAGGTGGTCTTGTCAGGTTTCAATAGTACTTTAGTTCGTTC
AGTGTTTACGTGTAACGCACGGAGTATGAGGATGAGACGACTGAATGCAGTGTAAGACGA
TATAGTTTTCAGCCAGTCATCATACAAGTTGAAAAGTACCATCTGAGGCTCTGTTGCCTT
CAGAATAAGATCACCAAACTTTTCAACTTTTAGACAAGCCTGGAAGGGCAGCTGTAGTTC
TGATCCTTTGATTACAATGTTGGGGAAGTCTAGCAAATGTACCTCAAGAGGATCCAACAT
TCCCTTTCTAGTGACAATAATTTGTTTTGGCTGTTCTTCAACTGGTAAGGACCGAATCAA
CGCAGCTACTTCCTCAGCAGTCTTCCATTTGGCGAGCTGTCCAAGACGTTTCTGCCCAGC
CCATACACTGGTGTGAATGATTTTAAGGAAAAGCTGGCCAGTACGAGGATTGAATATAAA
GATAGCTCCGTTTATGGGTTTGGTTGTTAAGTTTCCTTCAAAAGTCTTGTGTATTGTTAC
TCGGTATACATTTGTATCGTCAACAAACCAAATGATTTGATTTGAGAACAACTCTCCATA
GTTCTGACTGGATAGGTAAGGTTCAGTGGGTTCTGAGGAGTACAGCTGCAACGCTTTACG
TATGCGTTCTCGGAGTACGTACAAAGCTGGATTGGCCTTCATGATCTTGGCCATTGCTTG
TTGGATCAAAGGTTTGCATCCAGGGAACCAATTACCATATGCACTGTGCAAATTGTAAGC
CAGATCAATAGCGATCAATAATCCAGTCGGCGACGGATATATAGACATGTTATCCGTGGT
GTAATCCAGGAACTTAGCTCGGGCGTATCTCTCAATGTCGTGGGAGTCGTAATCGCCCCA
ACGAAGTTGTATGTCGAGCCAATACTTTTGGGTGGTCGTGTTGTCCATTGTGTCCTTAGT
ATCAGCTAATAATGATGGTCGCGACACGTTCCATTTGTATGCTGAGAACAGTAAGATATC
GGCGCAAGATGAGTTCATCTTGTAAGATTTACGAGGATGAATAGTTTCCTTTTGTACTGT
CTCGATTTCCAAGGCATCTAGTTCTTGATCAAACACCTGACAAAGATCCATGACGATTGA
TTCGTGAACTTTCTGCCACAAGTGAGCTCTGAAGATTTGGATGAGTGAAATCTTCAATGT
GGGGATTTTACCGTGCATGAATATACCGGTAAGGTCAAGTTGTACCTGGAAACCGACGTA
TACATTAGCTCTGTTGATTGTAGGTGACCACCATAAAGTGAAACGACGATTCGGGATTTG
GTTCAAACCGGATCGCTGGGCGTTTGTCAACTTCTTGTACTTCATTGATTCTTCAAAACC
GGATGCCTTCTCCCAAAACAGACCCTCCCAGGTCGGGAAGTAGGTTCCTTTGAATAGTGT
ATGTTCCAGAATTCCTTCAACTCCTCCCAAAGCCTGTATCATGTCTGTTCGGTAGTTGTT
CAAGTTCCACAGTTTACCGTCGTGGCGCTGGTGGGTCCACCAGAACGGATTCTGCTTTAG
GACCTGATACTGTTTGAATTCACGCTCGCTTACGACAAAGGATGGCGTATACGTACAGAA
TTCAAACAGTATCA
(2894 bp)

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