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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp36627_c2_seq5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_1_isoform_X1_[Papilio_xuthus]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:1.62 TPM:1.19
ORF EntryO_ErmoMG13795_complete:A_ErmoMG_comp36627_c2_seq5
Sequence
(Nucleotide)
CAACAACACATGTATGTTTTTCCACCTTTCATTTATTTTCTGCTCGTTGGTAGATGTCAA
GGGTAATACATGTGTCCTGAAATGAAATTTCAATTAATGACTGATTCTTACAAGAAGTTA
ATTATTTTTTAAATCCAATTGGAGAATACATACCCGCTGGTGGTGGTAAAACCTTGTACC
CAGCAGGGAACATGGCATCAAGTTCTTCATCAGTATATGGTCTGTTGCGTTCATCTATTT
CCTTCTCCCAACGATAAGCTTGTAGCTGCTCTGGAGTCATCGCTGCTACATGACCAGGTG
TTGGGGTCGCCAAAGCCATGGCCTTCACTCCCACTGGAGTAGACCCTCCTGGCGTAAATA
CAGGTGTATGTGGCGTTGGCGTGGATAGCGATGGCGTGGCGTGCGAGGGTGTGGCGTGCG
ACGGCGTGGCGTGCGACGGAGTGGGCGTGGCGGGCGCGGGTGTAGCGCCGGGGGTCTCAT
CCCAGCGCGAGCGTCGCTTGGTGCCCGGAGTCGGCGTCTCCTGTATGGTGTCGACACCAC
TACCGCGATCTGTACGCGGCGTCTCAGCCCATCCGCTATTATGTCCCGGTGTTTCTCTAT
CTGTTTTAGGGGTTTCATCCCAGCGATTCCTCCTAGAAGCATGGTGGGCAGGTGTCTCGC
GACCTGGAGTGGCATGTCCAGGTGTGATGTGTCCGGGCGTGGCGTCCCACACTCGAGCGG
ATGGCGTGGCGCCGGGCGTCTCACCACCTCTACCTCCACCACCTGGTGTTTCTTCCCATG
TTCCTCTCTCAGCATCCCAGGATGGTGTAGTCTGAGAAGTTGGTGTAGCTGATATTGTTT
TCTTCACAACTGGAGTTTCATCTGAACTTTGGTCCCATCTACCCTTGCGTTTTGCTGCTG
GTTTTACAGATTCTCCATTTGATTGTGCTACTGGTTTGAGGGTTCCTTCTCTTGCTTTTT
CCAAAAGTTTTTTCCTGAGCTCTGTTTCTTCAGCAAGAAGGTATTGTTCTTTCATTATGT
CTGTGTACGTTCTAGATCCAACATCTGGTGTTTTCCCACCTTCAGCAAATGGATCATTTC
TTTCAGGAGAGATAATCATCCTGCGTCTTTTCTGTCTATATTCATCTTCTCTATCTGCAA
TTGTAGGTCTTCTTTTGTCAGCGAAAGGATCAAACTCTTTGTCACTTTGTGCAATGTCAT
TCAGTATTGAAGCAGGTGCAGTATAGCCAGGCCTCTTCTGAGAAACTGGTACATTCTCCA
CATCATCATCTTCAACTTCATCATTGGCAGCAATTGATGTCACATATCCATCATATCTGG
ATTTGCCTCCTTGTCCTGAGCTATCATATATGTCACTATCGTAATATGTCTCCCCAAGGG
AAACACCTTTGTTTGATCCATTTTCCGGCAATTCACTTTTCTTTGACTGTATTTCTCTTA
TCTGCGCTTCAATAGCTTCATGAGTTCGTGGTATTTTATCCATGTTTATTAAATTACCGA
CATTTAATAGCAGGATCTAAACAAAATTTTGTATTTTTGGATAAATATTGCTTTGGTCCA
AGCGTGATACCGTAA
(1575 bp)

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