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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp36627_c2_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_1_isoform_X1_[Papilio_xuthus]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.96 TPM:5.12
ORF EntryO_ErmoMG13784_complete:A_ErmoMG_comp36627_c2_seq1
Sequence
(Nucleotide)
TTTTAATTAATTTCATTTATTGTTACATAAACCAAGAAATGTTTCTAAATTGTAATAATC
TTATTTAATAAACTTGTTTAGAGCATATAATCTAACTCGTACCTAATGAAATGATTGTTT
GGATCATTTTGTATTCTGGGGTATCCTGCAACAAGTGCGTCTTGTCCTCCAATGTAAAGC
GTGTTGTATATTTTCCAGTACACGTCACGGACTTTCCTTGCGGGATGGAACAAACCCTGT
AATGCGTATTGAAGTATTTTAATAGGGCCCAACGCAACTCTCATTCCCTCAACAGCATCC
ATGAAGGCTTGAACCAAATGTGGTGAAGTTTCGAATATATTTGGCCAAACATGGTTTAGT
AAATGAACGAGGGCATCTTCACAACCAAAACCATAAACGCCGAGTGACATGTGTTTAATA
GCAGCACAAGCTGTTTGTCTGTGTACTAGATCTCGATCCATTAGCGCGTCTTCCAACAGT
GGGCAAACTGCATAAATGTAATCCTTGCCCATCTCTCCAATGTACTCAAACAGGAAAGAT
AGGGACTTGAGGACACCATTTTGAACATTAAGTTCAGGGACTCTGTACTCATTCATTAGA
GCAGGTAATACTGTGAACGGTGAACATGTCTCTGCTACTATAGCAATGGCGACAGTTGTG
CATACTCTATTTTGTCTCTCTTGTACTTTCAAATTGTTAAGAAGTGTTGCAAGTACATCA
TGAGGACCGATCGCTTTGGCAATATAACCAAAAGTATTGACCGTCGCTCTTCTGATAGCC
TTTTTGTGAGCTTTTAACAATTCTAGAAGTTCGAAACAGATTCTCATCCATTCTCTCGCA
GACACAAACTCTGGTCCTCTGTCGGCGATACGGCCCACCAAGTCAATACAATTCTCTTGT
ACTTTTTCATGTCTGTTTTTCAAAATAGGTGTAAGTCTGGGCAGGAGATCTTTGATAGGT
GGAGTCATTTTCGTCATTCCAATAACATTGACAATAGCTTTTAATGCACCAAGTATAGAT
CCCAGTACTTCAGGATATTCTTCTCCTAAATATTCATAGAGTACGACACCAAGATGACCC
ATTAATTTTTCCTCCTGACAAGTTTTCATGACGACAGCGATCCTGGAAATGAGATCGGCA
GCTTGTTGACGAACTTTGGCAGACTTGTTATTCATACGCCACAAAATAATACCACATATC
TGTGGTAAATACGGTTTCACACGTTTGCCTAACTGGTTCACGATTGTTCCAAAACCGTTC
AGCATCACGACATCCTCAGTGGTCTGTTCTTGAAAGGCGTACAATATCCCATCAATAAGC
GCTTCTTCGAGTTTCGAATCGATGTCTGCTGCACCTAAATTAGCGAGAATCTTTTCAATA
GATTCCATAACCATTTTTCTGTACTGCTCATTGTCGTCTTTTAGATCATCAACAATTCTG
TTGATTATTTCTGATGCTCCAACCTTATTTGCGATTTCTACTGTCGTATCAACGAGCTGG
CGGTAGTTTCGGCGATCAAGGGCCATACGATGATTCCAGAAGTGTTTGAAGAAATGCGGT
AATATTTCATCCATTATATACTGAGGCTCCACACCATCCGTGCCACAACACTGTTTGACT
ACCTTTAAGACAATTTTTTTCATTTCCTCATCGGGTGACTGGAACTCACGAATAAGAATT
AACATTACTTCTCGTGTATAGTAATTAGCGTATTCTGCGTCCATGAGAGGAATGAGGTAT
CCAATGGCTTTCAGGAACGCAGCCAAACCTTTACCACGATGCGTACGAATACCTTTCCAC
AACGGTTTGAGTACTGAATCGAACGACTCGATACCGTAAGGCGTAGCGGCCTCGGCGAGA
GCGGCACTCGCTAAAGCGGTAATCGTTCGTACTTTTTGCTGTTCATCCACCAATCCATGC
TCAATAATTTCGACAAGTGATTTCAAATGTGGTAATATAGCACAACCCATCAAAATAGCA
ATCTGTTGTACAATTTTTATTCCCGTATGACGAGCTTGCCAGGACTTTTTGGATCTGCAT
ACAGCTTTCAAGAAGGGCAATAAAGATGGGATACCCAAAGCTGAAGCTACTACCGCAAAT
GCCCTTGCAGTTGTGTTTCTTACGTACTCATCAATGTTATCGATATCAGGTCTCATGGTA
GAGATCATGGTGGCCAGACCAGCCGCCTTCGCTAAATTTGAAATGATCTCACGGCCTTCA
ACACGCGCGTAATAATCTTCGTCAATAAGCAAGGGTTCAATTACGACAAGGATCTTATGT
ACGTAAGGCCGCACCAAGTCATCCAGTTTATACAAAATCCTGTCAATAACTTTGACCAGT
AAATGTCTCTCTTGATCTTCCAGAGTAGGGCTCATCAGCAACGGCAATATTTGATTGAAA
AGTGGTCCAGCACCAAATTCTCTTGCTTTATCAGTAATTTGACGTAAAGCAGCTTTGCAC
ATAGGTGGCGTACCGTTCTTAATTTTCAAGAGAAGCTTCATAATCTTCCGTTCTTTAAGT
TCGTCGGGTGAGAGCGTGTCTTCGTCGACGTCGATGAGCAGTTTGTCGAAGTACTGCGCG
TCCTCCGGCTTCATGAAGGGCAGCTGCTGGTTACCCTTGGGCTGCGGGTCGAGCAGACGC
GCGGCGGCGGCGGCGGACCCGCCCGCTTCCTCCGTCTGCATGAAAAACCCGATTGGAGTA
CCGCCCAACGGCGTGGGCGTCGCCGTCAGCTTGCGGGCCGGCGTCCGAATCGGGACGTAC
CCCGCTGGTGGTGGTAAAACCTTGTACCCAGCAGGGAACATGGCATCAAGTTCTTCATCA
GTATATGGTCTGTTGCGTTCATCTATTTCCTTCTCCCAACGATAAGCTTGTAGCTGCTCT
GGAGTCATCGCTGCTACATGACCAGGTGTTGGGGTCGCCAAAGCCATGGCCTTCACTCCC
ACTGGAGTAGACCCTCCTGGCGTAAATACAGGTGTATGTGGCGTTGGCGTGGATAGCGAT
GGCGTGGCGTGCGAGGGTGTGGCGTGCGACGGCGTGGCGTGCGACGGAGTGGGCGTGGCG
GGCGCGGGTGTAGCGCCGGGGGTCTCATCCCAGCGCGAGCGTCGCTTGGTGCCCGGAGTC
GGCGTCTCCTGTATGGTGTCGACACCACTACCGCGATCTGTACGCGGCGTCTCAGCCCAT
CCGCTATTATGTCCCGGTGTTTCTCTATCTGTTTTAGGGGTTTCATCCCAGCGATTCCTC
CTAGAAGCATGGTGGGCAGGTGTCTCGCGACCTGGAGTGGCATGTCCAGGTGTGATGTGT
CCGGGCGTGGCGTCCCACACTCGAGCGGATGGCGTGGCGCCGGGCGTCTCACCACCTCTA
CCTCCACCACCTGGTGTTTCTTCCCATGTTCCTCTCTCAGCATCCCAGGATGGTGTAGTC
TGAGAAGTTGGTGTAGCTGATATTGTTTTCTTCACAACTGGAGTTTCATCTGAACTTTGG
TCCCATCTACCCTTGCGTTTTGCTGCTGGTTTTACAGATTCTCCATTTGATTGTGCTACT
GGTTTGAGGGTTCCTTCTCTTGCTTTTTCCAAAAGTTTTTTCCTGAGCTCTGTTTCTTCA
GCAAGAAGGTATTGTTCTTTCATTATGTCTGTGTACGTTCTAGATCCAACATCTGGTGTT
TTCCCACCTTCAGCAAATGGATCATTTCTTTCAGGAGAGATAATCATCCTGCGTCTTTTC
TGTCTATATTCATCTTCTCTATCTGCAATTGTAGGTCTTCTTTTGTCAGCGAAAGGATCA
AACTCTTTGTCACTTTGTGCAATGTCATTCAGTATTGAAGCAGGTGCAGTATAGCCAGGC
CTCTTCTGAGAAACTGGTACATTCTCCACATCATCATCTTCAACTTCATCATTGGCAGCA
ATTGATGTCACATATCCATCATATCTGGATTTGCCTCCTTGTCCTGAGCTATCATATATG
TCACTATCGTAATATGTCTCCCCAAGGGAAACACCTTTGTTTGATCCATTTTCCGGCAAT
TCACTTTTCTTTGACTGTATTTCTCTTATCTGCGCTTCAATAGCTTCATGAGTTCGTGGT
ATTTTATCCATGTTTATTAAATTACCGACATTTAATAGCAGGATCTAAACAAAATTTTGT
ATTTTTGGATAAATATTGCTTTGGTCCAAGCGTGATACCGTAA
(4183 bp)

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