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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp36467_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_KGM_15573_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:3.99 TPM:2.94
ORF EntryO_ErmoMG13181_complete:A_ErmoMG_comp36467_c0_seq3
Sequence
(Nucleotide)
CTTTTGTGAGTTTTATCTGTTACAATACTATATTACAGAAATACACACTATATTTATTGA
TCACTTTAGTGTGATAAACAATGGCGATAGTTGAAGATGAAATTCAGAATGGTTCTGAAG
GAGAAAATGAAATCGAAGTAGTAGTTGAAGAGGATGATGGTGAACAGGATCCAGATTCTG
AAGATGAAATATTGGAGGGAGATTTGCAGAGGAAAGTGGCTGAATATGAGCATAGAATCA
CATCACATCCCTTCAATTATGATGATCATATTGAATTAATCCAAGCTTTGTGGCGTCTGT
CAGAACTTGGTCGTTGGAGGACAGCATTTGAAAGACTATGGGAGATGTCTGTAATCAAAG
TTGATCATTGGTTGTTGTGGCTCCGAACAGAAGAGAACATTTCACAATCTGAAGAATTGA
TTGCCAATTTGTTTTTTAAAGCAACCTGTGATTGTTATTCTATGTCCATCTTATCGAGAT
GGACCTCATGGGCGCTTTCATTGGACGAGATACCTAAAATACGAGCACAGCTTGATGAAG
TATTACGCCGTGGAGGTTCTGACCCATATTCTGGAAAAGTATTGTGGGATTTAAAAATTG
ACTTTGAGAAATCACAATTAAACGAAACATGCAAGGAAGATTCAGCCTACAAAGAGCAAG
AAGATCGTGTATTACGTTGTTTGGAGGTTGTTGCTTCATTGCCTATAAATAGGAATCAAG
ACGCTTGGAATCTATTTGAAGATTTTGCTAAAAATATTCGTGAACAAGATTATATACAAA
AGGTGGAACAACAACACAAGGCAGCTGTGGATTTTTTAAAGCAAATTGTACCATATGAAA
TGAAAACAAAGACAACCCAATGTTACGTGGAGAATTACAAAATATACCTAGAGTATATTG
ATCTTGTGAAGCAGTTGTCAGTTGAGGAGAAGTATGCAGAGTGTGACAGTGATGGACTAC
TTAGGATTCTGTACGATCGTGCGACATACGAATGTCTCCTCAATCCGGACGTGTATGAAT
TATTGCTTGATTTCGCGAGACACACTCAGTTGACGTCGTCGCGTGCGAGCTACTGGCGGG
TACTGGAGCTTTGCACTCGACGCTGCCCTCAGAAACACACGTTCTGGACTCTGAAGATGC
AACAAGCGGAACATGAGGAGAAAGATTTTGATGAGGTCAAAGCTATATTCGAAACTGCAT
TGTCAAAGGGATTGGAATCTTATAAAGAGGCTGAAATGCTATGGCTGAGCTATCTCGAGT
ATGTGCGTCGGAATACGAAGTTCAGTGACGATGAACAAGTGGAAAGGTTACGGGGCACCT
TCAGGCTGGCTTGGGATTCTCTTGCAGAGACTTGGGCCGATGAAGCAAATGATTGCGAGA
TACCATTATATTGGGCAAGAATTGAATACAAATCCTTGGAGGCGCCAAAAAGAGGGAAAG
AGATTTTTGAAGAATTATTCAAGTATGGACAGAACAAAACAATGTCGAAGTACTGGGAGG
CATTAATACATTTGGAAAGCATTCGTTCGCCTCCACCTTCAGAGTCTAAGTTTCGGGATC
TGTTGCGGCGAGCTCTCCGCGCCGTCGCCGACTACCCGCCCGCCGTCGCCAGACTCTGGA
CGGACTTCGAGCGGGATCACGGGAAGCTAGACACCACCAAGGAGTGCCACCAAACTTGCG
AGTTAAAAATACGTGAATGGAGAAAACAATACCAGGCTATGAAAGACAATATGATTAAGA
AAAACGAAACCGGCAAAACAAAAGATAATAAGAAGGGAAAATTTGAAAATAAAAACAAAA
AGTCTGATAACAAACAGAAAGGTAAAAGAAAATTGAAGGATGATGAAGAAGTCACTGATG
TGAAAAAGAAAAGAGAGGAAACGAAAGAAGTACCTAAGAGTGAAAAAGACAAAAGTAGTT
CTGGCCACAAGAGGTCACATGATGAAGAAGAGACTGAAGTTGCTGAGAATAAAAGACAAC
GCAAGGAGTTGACTGAGACAGCTGAATCTTCAAGTACAGAGGCCTGTACTTTATTTGTCA
GCAATTTAGAGTTCAAAGTTGATGAAGAAAAATTACGAGAAGAATTGACAAAGTTCGGTG
AGATCGTTGATTTAAGGCTTAGGACAGGAGTTAAATCATTCGGCGGTTCTATTTGTTATT
GCCAATACAAGACTGCGGATTCCGTAGAAGAAGCGCTGAAGCATGATAGGACTCCCTTAG
ACGGCAGACCGATGTTCTTATCACGATATTCTGCAGACAAATCTAAACCCAGTTTCAAAT
ACGCTACAACCATGGAGAAAAATAAACTGTTTGTAACGGGTTTGCCATACTCATGCTGTA
ATAAGAAAAGTTTGACGGAAATATTTGAGAAGTACGGAAAATTGAAAGACATAAGAGTCG
TTACTTTCAAGGACGGTAAACCAAAAGGTTTAGCGTACGTCGATTATGTGGACGAAGCTT
CAGCAGAAAAAGCTATAGCTGCCACGAACGGTTCACTTATTGGCGAGAGAAAGATAGAAG
TGGCGATCAGCAAACCGCCTCCCAGAGCTCAGAAACCACTCGGAAATAATAAACCAGTTA
CCGGAGGCATGCGACGAACGCAGCTAAGTTTCTTACCGCGCGCTTTACAACAAGCCTCGA
CCAGCAAAGCCCCTGCGCCGAACAGTCACGCCAATGGAAATGAAAAACGACCTCTCTCTA
ACAATGACTTTAAAAAAATGCTTGCTTCATCATCCTCACATAATAATTGAATCATTTAAC
ATGACATTCTCAATCTGTATTTTAATCTATTCTCGTTTCAGCTTTACTTTATTTTAAATC
GTCGGAAGGCATTTATTATGTTTTCGTTCTATAGTTATATGGTCACGGAACGCCTTCAAA
TAAGTTAAGTCATATGATTTTTAAAGATATTGTTAGTCATCCATTGTACAGTATCCAGTT
GATACCTTTTATTGTGGCTCACATTTAATAAATGAGTAGTAAAAGAGTGACTGATTAGAT
TGTTTGTTATCGCTAAAGTGAATGAATGTTTGAATGATATATGATGGAGATCTGTATTGT
TAAGTGAATGTAAATAAATTGTATAATTGATTGTTGACATTTCACTTGAACACAATAAAG
CAAAATAATTATTAGTATGTGAAGTGAAATGCCAGCATTTAGTCTCTCTGTGCTTTTTAT
TAGATTTTAAACATTTATTTTATTAGCATCTGGTAACTGAGAATGTCCCAAAATTCGCAT
GTAAATGAAGACTGTTGTGTTGTTTTTTGTTGAATTATTTTATCGTTGATTTGAGACTAG
CCGGGTGAATATATAGTAGATGACAGTAGAAACCTATTTAAATATGTTTACTCAACTAAT
TATGATAATCACATCTCAGTGAGTATTCTTTAGTGTAAGTTAGCATAAACAATCTAAATG
TACTAAAAAGGCCTGAATAAAGGAGTACTTGTTTTA
(3456 bp)

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