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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp36331_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP1,_partial_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0043279 P response to alkaloid
GO:0044822 F RNA binding
GO:0071008 C U2-type post-mRNA release spliceosomal complex
Transcript
Level		FPKM:6.64 TPM:4.89
ORF EntryO_ErmoMG12798_3prime_partial:A_ErmoMG_comp36331_c0_seq1
Sequence
(Nucleotide)
CGCACTGCGGGAAGTTACCGAGCTCGTAGTACTGCGGCGCTATCTTCAGGAGCCACTCCG
GTTTGATATCGGTGACAGTCCTGATGTAGTTCTTGGTGGTGAGCACAAACTCGTTGTATA
TGACCCAGTCGGGTTTGTGGTCGAGGCAGGTGGACGGGTGCAGCTGGACTATCTGATTGT
CCTTCACTGTTAGATAGTGACCGCTTCTCTCTAGGTGAGCCACCTGCATAAAGAATCCAT
TGACGAGAGCTTTCCTTATATTAATATAATAGTCTTTACTAGTAAACTCTGTACTCGTTC
GCTTCAAACTAAACCTATCCATTATCCTACTGAGCTGTTGTCTGACATTGTCTCCGGACT
TCAGTGATCTATAATTGATGAAGTTATCGTAGCACCAGTGGGGATCTTCCATGTTCTGTT
TGAAGGCGTGGTAGACGTTGAGCAGCGTGAGATGGTCGCCGTCGATGTGCGCGAACCGCA
TCTTGGCCTCGTCCGCCGCCTTCCGCGCCTCGTTGGGTCGCACGAAGCACTGCGGAACGG
ACAGCATGGCCGTGATGGAGAGGATCTCGTTGGAGCAGTTGTGGTTACAGCTCGCGATCA
GCATCTTGGCGAGCTGAGGGTCGAGGGGAAACTCAGCCATCACCGCGCCCAGGTCCGTGA
GGTTACCGTCGTCATCTAACGCCGCGAGATAGTTGAGCAGTTCCAGCGCCCTCATGAGGG
TCTCCGGCGCCGGGGGGTCCATGAAATCGAAGTGCACCAGGTCATCGATGCCCAACTTCT
TCAACTGCAAAACTACAGACCCTAAGTTCGATCTCAGAATTTCAGGATAAGTATTATCCT
GCATTTCATCTTTATACGCCTTCTCTGTGTACAATCTAAAGCACTTCCCGGGCCGAGTCC
TCCCAGCTCTACCAGCCCGCTGCTGGGCCGAAGCCTTACTGATCGGGGACACCAACAAAG
ACTCCACTCTTATCCGAGGGTTATACACTTTCTGCTTAGCAAATCCTGGGTCTATGACGA
ACACTACACCGTCTATTGTCAAGGAAGTCTCAGCGATATTAGTGGACACCACAACTTTCC
TTCCGATGGCACCGTTGGGCCTGTTCGGTGGAGCTGGCTCGAATATACGTTGCTGCAAGT
TTGGTGGTAACGTGGAATATAACGGTATACACTTCAGTTCTCCGGCATCGGTGCCCAAAT
TGTCAATCTCCCTCTTGATTCTCTTACAGGCATCTTCTATCTCCTCTTGTCCCGTCAAAA
AGAGTAGGATGTCTCCCGATATCTCCTCGCACATGTGTATTTGTATGACCGTTCTGATGG
CCGCTTCGAGGTAATCCCTTTCTGGCTGCGGTGTGTAGAATATCTCAACAGGGTGGGTAC
GTCCAGGAATGTTCATTAGCGGAGCATTGTCGAAGTAATGTTGGAATTTGCCAGCGTCTA
GAGTGGCAGACATGATAACTAGTTTTAAGTCGGATCTTTGTTTTATGACCTCTTTTAAGA
CACCCATCAATATATCTGTGGCCAGAGTTCTTTCGTGAGCTTCATCAAGAAGTATCACCC
TGTATTGTTCTAACATAGGATCAGACATGGCTTCCCGGAGCAACATACCATCTGTCATAT
ACTTCAAAACTGTTTGTGGTCCGGAGCAATCTTCAAAACGGATACTGTAACCTACTTCTT
GACCTAATGCAACATCCATTTCTTCAGCCACCCGTTGAGCTACGGACATAGCTGCCACTC
GCCTCGGTTGGGTACAGGCCACACCTTTGGATTTACCCAGGCTGACGGCAGCAAACTCTA
CGGACCATTGCGGTATTTGTGTGGTCTTCCCCGACCCAGTCTCTCCGACCAGGACGATGC
ACTGATGCGTGTTAAGGAGTCTCATGAAATCATTTTTGTATTCCCAGACTGGCAGCCCTA
ACCTTCGACGTAGGAGCTCGTGGTATTTCTGTGAGTGTGGTAACCCGGTGTATGGATTGA
TGCCAGGAGTGGCAGCAGCTGAGGTTGTGGTGGTAGACTCGACTGGTTCAACACTGGCAC
CGGACTTGGCGGCGGCTGCTGCCTTCTCTTCCCTCTTTTTCTTTATAAAAGGGTCCATAA
CTTCGATACGACGTTTAGACATTTTATTTTAAACATAAAACACGTAATTAAATTAACAAA
CACACCGCTAAAGTCCTTTTAGACTTATTTTACAAAGCC
(2199 bp)

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