SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp36076_c1_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protein_SMG5_[Papilio_machaon]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0031625 F ubiquitin protein ligase binding
GO:0032204 P regulation of telomere maintenance
GO:0035303 P regulation of dephosphorylation
GO:0042162 F telomeric DNA binding
GO:0042826 F histone deacetylase binding
GO:0051721 F protein phosphatase 2A binding
GO:0070182 F DNA polymerase binding
Transcript
Level		FPKM:5.93 TPM:4.36
ORF EntryO_ErmoMG11953_complete:A_ErmoMG_comp36076_c1_seq1
Sequence
(Nucleotide)
GCCTCTTCACTATCTCTAAGGTGACAGAAATAGATGAAACTCAAGCCTTTGCATGCAAAG
CTTTCACTCTTGCTTTATTATCACAGCTTCTATCAAAACTGCTACGACAATTGGAATCAA
TTGGTCTTGTAAATCCGAATTTCATTTATAATAACTATAAGACATCAAAGTTACGCAATG
AACAAAAAGAAGAACCAAAAAACAATAATGTAATCATTACTGAAGACATTTTAAACATTA
GTATGATGAATGGTAAGAAAGAAGATAATGTTGAAGATTCGAATAAAAATGATTTAAATA
TAAATAATGAGAAAAACGTAAATGGTGATTCTAAACAAAGAAAATCACTTTCCAAGCGCC
GCCGTCGTCGTCGCGTTGCTTCTTCTGACAGTTCTGAGTTAAGTGCAGACTCTGAAAATA
GTGACTTGGATGAAGTGGAAAATACAGACAATGAAGATTTATCTGACTCATCATCACAAT
CCGAATCACTTAGTGATGTTAGTGATTTGGATGACAAAGACAAAGATGAAGAAATGGATA
CAAAACTAGATTCAGATAAAAAAGTTAATGGAGATATTATCATTTCACAGAATCCAGATG
TGATTACAAATAATTCAACTAAAAATTCAATTAAGATTCAAGATTTTCCAGTCAATAATG
TTTCAGAACATCGTCAAGTAAGCAAATTAAACACAACACAATTGAAAATGTTCTTACAAG
GAAATAATTTTATGGCTAGCATCAAGCTTTTGTTAGATTGGATTTTGCTTGAAAAGGATT
TGATACTTTCATGTGGAGACAGTGGAGAATCTTTATTTCAATGTGTTGTTGACTTACTCA
ATATATTTTCATTCTATTTTAATACAAAAACTGATGATGAAACTGAGGACGATTGTCAAG
TTTTAAAATATGTCAGAAATTTAGTAATGAAAATGAAACTTGAATATAAAACAATGCCTT
TGCCTGAAGATATAAATTTGCGAGGTACAAATATTTGTAAATTTGATAAAGATGCTGCTG
AATGGCAAATTTTAGAAAAATACAAACTATCAATTTATGAAGAAAATGTTATCAGAATTC
TGAACTTCATAGACTTTGGCAATCAAATAGCTAAAATTGTACCCAGAATAAGATACAACA
GATCTATGAAGCTATTTTATCTAAAAAACATTCATCCTCCGAAATTAACAACGAAAATTA
CCACAAGAGAAGCAGAGAATGGCACAATACAAAAAAACATACCGAGTCTAATGAAAGTGG
ATTACTAAGGCGTCTAGGTCGTCTTTGGTTGACGTCACAAGTTAGAGAATTGGAACGTAG
TGGACAAGCTACAACACCTGCTTTACTTGTACTTGACACTGCAGCCCTCAACAAACATCT
GCGCCGCGTCAAACAGCTCCTGCTTACAACTAATTTCGTACTAATGGTACCCACTGTTGT
ATTACAAGAACTGGACAATCTGAAACGAGAGCAGAGTACGGCGCGTAAAGCTATTCGTTG
GTTGGAACTCCAATTAAAGAATGGATCGAGGTTTCTGCGAGCGCAGCGACCGGGCCAGTC
CAGACCTCTGCCGTTCTTGAAATATCCCCGTAAGGCTCCGCCCCACATTAATAATTTCAT
ACAGATCTTAGAGTTTTGCAACCATTTCGTTGCAGAAGATAAAAATACGCAAGGGTCCGG
TGATGCTGAAAATCTTTTACATGGAAAGCCTTCCTCTGTTCTTATATTACTTGTTGGTAA
TAGTAGTGAAGAAGAAGAACAGTATAAAGAGTTTAGTGTCCTGGGCGCCGCGCAGTCAGC
CGGGATTTCAGTTGAAAACATCGTGGATTTCTACAGCAAGTGGCGACAGACATCGCACAA
AAATGGCAAAAAGAGATGAACGTGTCGATCGTAAGATCGGTCGTGGCTACAATGGAAAGA
ATAGACATCGAGGACCTTCGATATCGGCAAATCATCAGAATCTACTGAGATTTGATGCAA
TACGTGCGAACGTTCGCTACTTGACAAACTAATGTTGAAGATAACATTATAATATGTGGG
GAAAAAAATCATTATTTCTATCACCAATATGTTTATATTCATACATATTATGTATCCTAA
ATTCATAACTCATTTTTAAGAATGCTATTG
(2130 bp)

- SilkBase 1999-2023 -