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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp36029_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:4.41 TPM:3.24
ORF EntryO_ErmoMG11795_complete:A_ErmoMG_comp36029_c0_seq4
Sequence
(Nucleotide)
TTTTTTTCCGAATATCCTCATTTATTTGGTTAATAAAAATTCATTATTTACAAATTAGCT
TATTGGTCTATTTAACTTGAAGAGTCGTTCAAACTTGATCTACAAATCGTAAAACAAAAA
ATAATTACTGTTTTAACTGAAAATATTAGCGGCAGTCGACAACTTACCAAACAAATAATA
AAATATACGTGACAAATGAGTGATCAAAAGTAAACACGGTGCGCATTAAAATCTTAATAG
TACAACCGTGACTTATACAGGCCACGAAAACCGTAAACCTTGCATTACTTACCTACGCTA
CGTTACAAATAAAAATATCATGTGAAACACATCACGTGCAATTTAACATTTCAAACAATA
TAAATTATACGTGTTTCTATGATAAAATTTACGTCAATGTGAATTTACACAAGACAAAAA
TCGCAGCCATGATATAGTTTAACCACAGATTAAAACTAGCACAGAAGGTCAGCTTCGGTC
AATTGCTTGAAACTAAAATGAATATTAAAGCACTCGAAGATGTTTTAGGTATACTCAAAC
ATTGGATTTAAGATATTGGATGTTTTAGTCAGGCCGGCCTTCTGAATTTATCTTATGGTG
TAACTATTAATTAAATTGAAAGTTAAGTCTATATCTATCCGAAAGTCCTAGTCGCCGCTG
CGAGGTGAGCGGTCAGTGCTGCCGTCGCGATCCTGCGTCTGTCCGTTCTGTCTCGGCGAG
CGCGAGCGGGAGCGGGAGCCGGACGCGGACCGTCCGGCGGAGCGGCCGCGCGATATGGAC
CGCGAGCGGGATCGAGATCTGGACCTAGATTTAGTCGGACGACGCTCTTCCTCTCGCTTC
GGCGACGCCTCCTTGCTGCGAGAACGAGATCTCTCCCTGTCAAATACGAAATTAACGATC
AATGCACAAACCATACTACAATCAAAATGTCAACATTAACTCTAAAAACAAAGAGGGTTA
TTTAAATCATTTTTACCGCCATTTATTTAACTTACTGTACATTTTGTAGAGCTACTAACT
TGCTCAAGCACTGGTAAAGCAAGCATGCTTGTGAAAAGTAAATGCAATATAGGCGCTTTA
TGGTTTTGAATTTCCTTTTATTCCTTTATATTTTATATCAACATGAAAAAACTGCAATAA
ATTAAATGATACCAAAGATAAAACATCAACAGATCATTGCATTCCTAATTTCATCCCCAA
ATAAAACAAAATAATAATTATTAAAGTAAATTATAAAGCGACAAGTCTACGAAACTAAAT
ATTATATAATAATAAACTCTACGACACATTCACAGTGTATTTAGGGAGCTCACCTCTCGA
CGGCCACTTCTCTTTGTGACGCAGCATAACATGGAGAGAGTTAATAAAACATTTTATGTT
GTGCTGTCAATGTGTAGCGTAATAAGCATCATAATAGAATTATACTTTCATTTTAGTTGA
CAAATTTTATACTTTAAAGATAAAGCGACATTACTTTTCAAACAACCGATGTTATAATTG
AAAATTTGAGTCAATGAATTCTAATAGCAAAATTTACATTGATCCAGTATTCACTCATTT
ATTAATAGCAAAAGGCTTTATTTGCATACAAAGCACAATTAGTATAGTTAAACTATTAAT
ATAGATGATTTGTAGTACAATCTTGATTTACAATGAAGACAATTTTTACCAAACATTTTC
AATTATACCTTTTCTGCTGTAACATAGAAGTATTGTATTGAATATAGTTTGTATTGGCTG
CAAAAATAGGGTCTTTCTTTCTATATTTTTCCGTATTAGAATTCATTTCGGATCATCCCG
TATATTACTTACTGGATCAATGTGCTAAAGCCATTGTAACAAAACGAGAGGTAGACTGAA
ATGTAATTCCCCTTAGGTAGTTTCGTTCCCGTGATGAGAGAACAATTGACTTACTTGGAG
TCTGGTTTAACATCGCGCGAGTTGGATCGTCTTCCGTTTCGGTCGGGGCGGGACTGCGAG
CGGGAGCGGGAGCGAGTGGCGGCGCGATGACCGCGACCCTCCTCGTCTTTATTACGGCCA
TTGGAGCGGGATCTAGAGCGAGATTTGGCTACTGGGCTCTTGCTCTTCGGCCTGGATTTG
GAACGAGATGAACGACGCGACCTGGAGCGCGAACGTCTCCTTTCCCTGGATCGGGACCGA
GATCGGCTGGATGATGAGCGCGTGCGTCGGCGAGATGATCTACGATCTTCCACCAGTTTA
ACTCGACGTCCGTTCAGTTCTGTGCCGTCTAATTTTTCAATCGCAGCCTTCATGTCAGAG
TGAGTCGCGAACTCAACCACACCCTCATTTCTGTGTTGTTTGTGTGCATCAGCATAAGTA
ACTTCACCAGCTTGGCGCATATAATCTTTCAAATCCTGCCAGCTAATGCGGCTAGACAGA
TTCTCGACGATAAGCCGATACTCGGTGCGCGTCGGAGGTCCATATCTATAAGTATTGTGG
TCATTGTCGTACCGCGACCGGCCGCCGCCGGAGCGCTCGTAGTGCCGGTCGCGCCGGTGT
CGGTCGGCGCTGCGGTCGATGCCCCGCGCCGGCTCCACCACCACCCTTTCACCTAGTAGT
TCTTTTCCGTTTAATTCATATACAGCATCATCAGCATCTCTGTAATCTTCAAATTCAACA
AAACCATATCCATTCTTGATAAGTATATCTCTGATTCTTCCAAAGCCTTTGAAGAACTTT
TCCAAGTCTCTCTCCCGTACTCCGAAGGGAAGTCCTCCGACGTATACCCGAGATCCAACC
ATTTTCCAATAAAGAAGTAAAACTATACAATTTTAAGTTAAATTAACAGATCATCTATTA
TTGTGACACTAATTTGTAAAACTAAAACCCATATTAGATTTTATTTATTTTTGTCAGACG
CGCGCTTACA
(2890 bp)

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