SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp35386_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		putative_lectin_C-type_domain_containing_protein_[Danaus_plexippus]
Ontology
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0004528 F phosphodiesterase I activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008409 F 5'-3' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0017108 F 5'-flap endonuclease activity
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0036297 P interstrand cross-link repair
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0070336 F flap-structured DNA binding
Transcript
Level		FPKM:2.69 TPM:1.98
ORF EntryO_ErmoMG10199_5prime_partial:A_ErmoMG_comp35386_c0_seq1
Sequence
(Nucleotide)
GACTGATAATGTCTTAACGATATACATATTGTATCGCATAAAATATGAGTTAATTTATGC
ACGATTATTAACATAAATGCAAATACACAAAAAAAAGATATAGCCACCATTTCAAGTTAT
ATTCGGATTTCGAGCTTCCCTTTTTTGGACTGGAAATTATGTGCAATTATGAACACTGAG
AAATTTTGTCGATCATAGACAACTGAAATGAATCAGATTGTTTTTTATGACATCGTTTGA
AAAATTACATGGAGAATGGAAACCAAGATTAGTATGAATTTCAATACCGTACTCTAAAAT
AGAAAATTCAATATTTAGTTGTGTTTTATCATTCATTATGACACTTCATATTAACAATTG
TATCAATTCTATTAATCACATATCAAAATATACGTCTATCTTATCAGATAAAATCTTAAC
AAAACTAACCTACCCGTCTTATAGACTACTTAGCAATTCAACCCTCAAGAATCTTTTGTT
AAACAAAATATTCTTCGCTTTTATACATAATTTCACTACTCCATTTCTTAATCAATTAAA
AAGACTATACTTTTCTGTCGCGTTGATTTTTTTTAAATAAATTTTGATATGGGTAACATT
TCGCATCATTGATGTCGTCGACACGCATGCGCAAGCAAGCGACACATAGTAAAGCGATTT
GTGTATTCTATTCTATTGTTTCGAGTCTATACAAATACGAAAGGGAATAGCTCACAATCA
TCAAAAATCTACACTTAAACGCATGACGTTTATTTTGTTCACATAGAGTTTGTCCCATAA
GGTCTATGTACCGACATCACTTGGCGTGGAGCGCGCGCGGGCTCGTTTCTGCGTGTCGGC
TCCGACGTAGCAGAAGGCGGCGCGCACGCCGGCCGAGCGCAGGTAGTGCATCCACTGGAC
TTGCTTCACGGACGGACGGTCCGCGTCAGACTTCACCTCCATGAATATTATCTCTTTAGT
GTTTACATTCCACAGTGTGACGTCCGGGAACCCGCTGTGTGCGTGCCCGTACTTCTTGGC
GAGCCGCTCGCATATGAGGGCGACCTTCTGCGGCCCGAGACAACTCGCTACTATTTCTAT
TTTCTCCAACTCTATTGTTCGTGTAAGTCCGGACAATTCACCTTCAGGCCTAAGTTTCCA
AACATGTCTTATTTTATCCAGCATATCCTCTTCGGTTGATGTCGCCAAATGTTTCAATCT
ATCATCGATCTTTTCTTTTCTATTTATATAAAAACTATCACAGTACAAATCCAATGGGTA
CCTCTGGTAATAGCTGAGGAATATACCGGATGTCCCGTGAGGTTTCGTATATATAATGTC
CCAGAACAAAAGAAAGAATATCGTCGTCACTATCCTGCCTTCCCAATGATCACCATCTGT
GTATATTCCTTCACTAGTATAATGCCAGATACAATAATCTTCAACAGTAAGAGCTTGCCT
TATCCCATTTATACACACTTCAAACTTTAATTTACCTTTAGAAATGTTCTCTAAAGGATG
TTTATGTAAATGTTCTGCCTTCAAATCCTTTTCCAATTTGATATTATTTTTCGCGATTTT
ATCAAGAACGTTTCTTAACTTCGTGTCTACATTTGTCTTCTGTTTAGAAATGATTATGGC
TTGAGGTCGTATCGCGTCCTTAACATCATCCGACAAATCCTTTGACTGTAGTCCTTCCAA
TAAAAATTGAGCTGCCTCATCGTGTCGTTTTAGATATTTGTGTAGTATCAAAGCTTTCTC
GATATACCAGCTTGCTTTCTTGTGTATTCTGAACGTGTCCTGTGCTATGATAGTGCTGAG
TATTTCAACAGCGAGTTGTGCGTTAGAACCTCCATCATTTTTAATTCGTTTCAATGTCTG
AATTCCTTCCCCTAAAATTTTGACGAATATGTACGGTGGCGTGTAACGGCGTAACCATTC
TGGTTGTGATTTGTACCTAACCATATCTTCTTGCTCTATTTTCTTGTACATCTCATAAGC
GTCTCTAATTAAAACACACTTTTTATTGTCATCAGCTTCAGCTAAATAGTTTTCGTATGT
GTAGTGCGCTTCTAAATATTTCTCAAACTCTACTCGACTTTTAAAAACAACACTGGCATC
ATCGAGTTCCATGTCTTCACTTATTGGAAACGTTTCGCGGTTGATACTATTGTGCAATAA
TGTCAATTCCAGTCTCTTCTCTCGAATAATAGCAAAATTTATTCCTAAGTAGGTCAACAA
ATACAGTTCATACAGTGTACTCTTTGCTTTTTCAGATAATCTGTAGCATGACCCCAACTT
CTTTTGCAATATTTGCATAACTCTGGTTTTGTTGCTGGTAGAATTTGATTTAGTTTGTGT
GAAGAAGTTGCTGATCGGTTTCTTGTTACAGTAGTCCTCTAATAATTTTATTGCACTTTG
TTTTG
(2405 bp)

- SilkBase 1999-2023 -