SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp20008_c1_seq1
Scaffold_id
NCBI non-redundant
(nr)		RNA_polymerase-associated_protein_CTR9-like_[Papilio_machaon]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000993 F RNA polymerase II complex binding
GO:0001711 P endodermal cell fate commitment
GO:0001826 P inner cell mass cell differentiation
GO:0001829 P trophectodermal cell differentiation
GO:0001832 P blastocyst growth
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007259 P receptor signaling pathway via JAK-STAT
GO:0010390 P histone monoubiquitination
GO:0016055 P Wnt signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0016607 C nuclear speck
GO:0019827 P stem cell population maintenance
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 P histone H2B ubiquitination
GO:0035327 C euchromatin
GO:0042169 F SH2 domain binding
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0070102 P interleukin-6-mediated signaling pathway
GO:0071222 P cellular response to lipopolysaccharide
GO:0080182 P histone H3-K4 trimethylation
GO:1900364 P negative regulation of mRNA polyadenylation
GO:2000653 P regulation of genetic imprinting
GO:2001162 P positive regulation of histone H3-K79 methylation
GO:2001168 P positive regulation of histone H2B ubiquitination
Transcript
Level		FPKM:4.30 TPM:3.17
ORF EntryO_ErmoMG1575_3prime_partial:A_ErmoMG_comp20008_c1_seq1
Sequence
(Nucleotide)
ATGAGAGCTGAGAGTTGCCATCACTTGGCCAGAGCCTTCCACGCTCAAGGTGACTGTGAT
AAAGCCTTCCAGTATTATTATCAAGCTACTCAGTTTGCACCCGCTAACTTTGTCCTTCCT
CATTATGGGCTGGGACAGATGTATATTTACAGAGGTGATACTGAGAATGCTGCCCAGTGC
TTCGAAAAGATACTCAAAGCTCAACCCGGCAATTATGAGACAATGAAGATATTAGGTTCA
CTGTACGCTAATTCACCATCACAGTCCAAACGAGATATAGCTCGGCAACACTTGAAAAAA
GTCACAGAACAGTTCCCTGATGATGTGGAGGCTTGGATAGAGTTGGCTCAAATATTGGAA
CAAAATGATTTGCAGGGGTCGCTTGGTGCGTATAGTACCGCCATGAAAATTCTCAAAGAA
AAAGTAAATGCTGATATACCCGCTGAGATATTGAACAATGTTGCAGCTTTACATTACAGA
TTGGGCAATTTGAATGAGTCTAAAAAATACCTTGAAGATGCCCTTGAAAGGGAAAAATCA
GATGCCGAAAGTTTAGATGCACAATATTACAATTCTATTGCGGTCACAACTATGTATAAT
TTAGCTAGACTGAACGAAGCAATGTGCATGTACAACAAGGCTGAGAAATTGTACAAAGAT
ATATTGAAAGAGCATCCCAATTACATTGACTGCTATTTGAGATTAGGTTGCATGGCTCGT
GACAAAGGTCAGATATATGAGGCTTCTGATTGGTTCAAAGAGGCTTTGAAAGTGAACACA
GAACATCCCGATACTTGGTCCCTGTTGGGTAACCTGCATTTAGCACAACAGGAGTGGGGC
CCCGGACAGAAGAAGTTTGAAAGAATCCTACAGAACTCTTTGACGTCTAACGATG
(895 bp)

- SilkBase 1999-2023 -