SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp19525_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_superkiller_viralicidic_activity_2-like_2_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.13 TPM:2.30
ORF EntryO_ErmoMG1383_internal:A_ErmoMG_comp19525_c0_seq1
Sequence
(Nucleotide)
AAAAAATCGGATACACCTGAAGAGTTAACAGCTGTTGGTAACAAGCGTGCACACAATGAT
GTTGAATATGCTGATACTTCTGTCGCGAAAAAACCTCGAGAAGAAGAAGATGAGGCCAAC
TTAATTCAAGACATTAATATTGATCTGCTGCAGTCTCGTATAGTCATACATACTTTGGAA
ACTCATGAAGGATGTACACATGAAGTTGCGATACCACCAAATCAGGAATATGCTCCTCTT
GTGCCGCTCACATCAGAACCAGCTAAACAGTACAAATTTATATTGGATCCTTTTCAAAAA
GAAGCCATACTGTGCATTGATAACTTACAATCTGTGCTTGTTTCTGCTCATACTTCTGCT
GGTAAAACAGTTGTTGCTGAATATGCAATAGCTTTATCACTAAAGAACAAACAGCGGGTA
ATATACACAACTCCCATCAAAGCACTTTCCAATCAAAAATACAGGGAGTTCTCAGAAGAG
TTTCATGATGTTGGTCTGATAACTGGTGATGTGACAATTAATCCGTCTGCTTCATGTCTC
ATCATGACAACTGAGATTCTCAGGAATATGTTGTACAGAGGTTCAGAAATCATGAGAGAA
GTTGGTTGGGTGGTGTTTGACGAGATTCATTACATGAGAGACAAGGAGAGAGGTGTTGTC
TGGGAAGAAACTCTAATTCTCCTCCCGGATAATGTGCATTATGTGTTTTTGTCGGCTACC
ATACCTAATGCTCGTCAGTTTGCCGAGTGGGTCTGTCGTCTACATTCCCAGCCTTGTCAC
GTGATATACACAGAGTACAGACCCACTCCATTGCAACACTACATATTTCCAGCTGGAGGC
GACGGAATACATTTAGTTGTTGATGAAAAGGGTGTATTCAAAGAGGATAATTTCAACACC
GCAATGACAGTGTTGAATAATGCTGGCGAAGCAGCCAAAGGAGATCAGCGCGGTAGACGC
GGCGGACCCCGAGACAAAAATCAAACTAACATATTCAATATTGTTAAAATGATAATGGAA
AGGAATTTCGCACCAGTAATTATATTCAGTTTTAGTAAGAAAGACTGTGAGCTTTATGCT
CTACAAATGGCGAAATTGGACTTTAACACAATTGAAGAAAAAAAACTAGTAGACGAGGTT
TTTACGAACGCAATGGACGTTTTAAACGAGGAAGACCGAAAACTACCGCAAGTGGAAAAC
GTAATACCATTATTGAGGCGCGGCATTGGTATACATCATGGAGGTTTACTACCTATATTG
AAAGAAACCATAGAGATACTGTTTGGTTTGGGACTTCTTAAGGCATTATTCGCGACTGAA
ACATTTGCGATGGGACTAAACATGCCTGCCAGAACTGTAGTGTTCACAAGCTGTCAGAAA
TTTGACGGGAAGGAAGTAAGATTTTTATCATCAGGTGAATACATTCAGATGTCGGGTCGC
GCCGGACGACGCGGGCTGGATGACAAGGGAATAGTTATCCTGATGATTGACGAGAAGGTC
ACTCCCGCGGTGGTCAAGGGGATGGTGCAAGGAAAAGCAGATCCCATTAATTCTGCATTT
CATCTAACTTACAATATGGTACTTAATTTATTGCGTGTGGAAGAAATAAACCCTGAATAC
ATGTTGGAAAGAAGTTTCTTCCAGTTTCAAAATCAAGCAGCCATACCAGATCTTATTGAA
AAGGTTAAAA
(1690 bp)

- SilkBase 1999-2023 -