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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp19354_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X2_[Papilio_polytes]
Ontology
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:2.75 TPM:2.03
ORF EntryO_ErmoMG1317_3prime_partial:A_ErmoMG_comp19354_c0_seq1
Sequence
(Nucleotide)
AAATTCCTTGGTATTCAATTAAGAATAATATTTTTTCCATTCTTTACATTTTATATCTCG
AGAACAACAGTAGATATTGACAAGCATTCGTGTGCCATCAACGTGATTAAATTCAATATT
CTCACTTACAAAAATGGAAGATGAAACAAGTTCCGACATCCAGAAATCCTCTGAAAACCC
CATGGATACAGATGAGGGCCCTTTACTAAATGAAAACTCCAATGGGCTTTCTCATTTACT
GACAGAAGGTGAATTTAACAGTGTCGACGCTGCTGTAGACGAGTCTTCGACTTCTAATCA
ATGTTTCTTAAACGCTGTGGAATTATCGGAAGGAAGTGCCAGTGATTATCTTGAAAATAA
CGGCCCTCGTTTTAGTACAGACTCTTTTGACATTGGTGATAATGCTGTTACTTTTCCCAA
CGACTCTTTAAATAGCGCCTTAACTGAAGAGAACTCTATTCAAAGTGATTCTGTGTCACA
TAAAGCAGTTTTAGACCCTGACAGCAGGCAGTCAGAAAGTCAACCTGCTACACATGCACA
TGCAACGGAGCTCAATGACAACTCTGATGATCATACTACCTTTACTACTGGTTTGAAAAG
AGTAATAGAGGAAACTAAATTGGAAGATATCCAGAATAACCAACGGGCAAAAGATATAAT
TGATAACAAAGAATCTAAACCAGATGAAGAAATGATTAATAATCCCAATGACTCGAATTT
CACCACGAGCCTTAAAAGTACTAAGGATGAAGAGAAAGTATTTGTTGAGTTTAAGGAGGA
GTCTAAACTGGGGCCAATGGAAAATGATGAACCATCAGAAGGAACATTTGAAAATGAAGT
AAGTGCTTCTGTTGCCACTGATCACCAAAATGTAACTGAGCAGTCGAAACCTGAACTAAT
GGAAACTGATGAACCAGAACACGGGAAACAACAAGAAAAAACTGAAGAGCAGTCAAAGGA
ATCACCAAATAAGGTAGGTGGTGCAGAAGAAACTGAAGTGGTATCTGAGGATGAACTTCC
AGAAGTGCAAAAGCCAAGCATCAAAGATGCTGAGAATGTATCAGATGATGAATTGCCAGG
GCCTAAGCCGGCTGAACTCCCAGCTGACACCGAGGTAGTGTCAGAAGATGAACTGCCAGC
ATCAAAGAAAGAATCTAGAAAACGCAAGCCAGATGAGGAGAAAAGTAATTATGATCCAGG
ATCACCAACATCTGAGGGTGAAACAGCTTCAAAGAAACAAGCTATTGCTAAGAATGGAGA
AAGCAA
(1266 bp)

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