SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp17064_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC2_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005743 C mitochondrial inner membrane
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032183 F SUMO binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
Transcript
Level		FPKM:2.52 TPM:1.86
ORF EntryO_ErmoMG349_5prime_partial:A_ErmoMG_comp17064_c0_seq1
Sequence
(Nucleotide)
GCGGCTCCCCACCTTCCCGCACGACGCGCTCACCTTGCCGCACAGAGTCTGGAAGGTCAA
GTTTGTAGGAGAAAGTGTCGATGACTGTGGCGGTGGGTATAGCGAGAGCATAGCAGAAAT
GTGCGAAGAATTACAGAATGGTTCGTTACCGCTACTAATGGCTACTCCGAATGGACGCGG
CGATGCGGGTGCTTCCAGAGATGCATTCTTACTGAACCCAACTGCCAATACACCACTACA
TCTGCATTGTTTCAAGTTCCTCGGTCTTCTAATGGGAATTGCGATAAGGACTGGATCACC
GTTATCGCTGTCGCTGGCTGAAGGCGTTTGGCGTCAGTTAGCGGGACAGTCGCTGCGACC
ACAGGATCTCGCCGAAGTCGACAAAGATTTCTTACCCGCTTTACTTTGTATTCGAGATAT
GACGCCACAAAATAAGGAATTACAGAATCTCGAGTTGCCGTTCTCGATACCTTCAGCAGC
TGGTCACGAAGTTCCGCTGTCGACACGACACAAAAGAGTAACTCCTGACAATAAAGAGGA
ATATGTGCAGTTAGCATTGCATTACAGGCTCCATGAATTCGATGAACAAGTCCGAGCGGT
CCGCGACGGCATGTCCCGCGTGATCCCGGCGCCGCTCATCGCGCTCTTCAACGCGTCGGA
ACTAGAGACTCTGGTGTGCGGCTCGCCGGATATACCTGTCAATACGTTACGAGCTTCCGC
CACTTACAAAGGTGTTGAGCCGAATGCACCTCTAGTACAATGGTTTTGGGAAGTAATGGA
AGAGTTATCTGGCAGTGAACGTGCTTTGTTCTTGCGATTTGTATGGGGACGAACACGTTT
GCCGAGAGCACCACAAGACCCAAGACAGAGAGATTTCGTACTACAGGTACTCGATAAATA
TCAGCCACCCGATCATTTCTTACCAGAAAGTTATACGTGTTTTTTCCTGCTCAAGATGCC
AAGATATTCGTGTAAATCTGTTCTACGAGAAAAGCTAAGATACGCAATTCATTTCTGCAA
AAGTATCGATACCGACGAATACGCCCGAGTAGCGTTGAGCGCAGCCGAACGTGTTTCATC
CGAAGAGTCTGATTCAGACGGAGACACACCACTCCCGTCACATCCTCCTCCATTATACTC
CTTGACTAGAGCACCGACGTGGCTGTAATACTAACAAGATTGTTAGTGTTAAAACTATCG
TCGAACATTTATACCACCATTGAATTGGACTTAGTTATACATGAATAACTCAATCGACAT
TCTTGGTCAAAAATTTCACAGTAATATTGAGGGATTATAAGTTTTAGTCTTAGAGTAAAT
ACAT
(1324 bp)

- SilkBase 1999-2023 -