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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp4815_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_THO_complex_subunit_1_[Papilio_machaon]
Ontology
GO:0000018 P regulation of DNA recombination
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0031297 P replication fork processing
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0042981 P regulation of apoptotic process
GO:0045171 C intercellular bridge
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048297 P negative regulation of isotype switching to IgA isotypes
GO:0051028 P mRNA transport
GO:2000002 P negative regulation of DNA damage checkpoint
Transcript
Level		FPKM:27.05 TPM:27.21
ORF EntryO_BomoSK1977_3prime_partial:A_BomoSK_comp4815_c0_seq1
Sequence
(Nucleotide)
AAAAAAAAAAAAAAAAATCTCATAAATATTTAATAGTGATTGCCAATTAATTAAAAGTGT
AATAACAACATCGAATACGACCAATATGTCGAGCAAACCAGGATTCGAAGAACTCCGCAC
GAAATACAAAGATGTACTTTCTAAAGCCTTTGCAACGAACAACATTGACCTCATCGATTC
TTTTTCCAAAAACACTGACGAAACTGACAGAAAAGCAGCTATGGACCAAGCATTTAGGGA
TAAGCTACTTGAATTACTTACTGAGGATCATAACACTCTTGAAAATTTTGTATCGTTCTG
CATAGAATCATGCAGGCGACTTATGGTTACGCCAACAATGCCTGTTGTATTACTTGGCGA
TATCTTTGACGCCCTCACACTAAATAAATGTGAACAATTATTCTCATACATTGAAAAAGG
TGTCAGTATATGGAAGGAAGAACTATTTTTCGTGGCATGCAAAAATAATTTATTGAGAAT
GTGTAATGATTTATTAAGAAGACTTTCTCGATCTCAAAATACAGTTTTCTGTGGACGTAT
TCTACTTTTTTTGGCAAAATTCTTTCCATTCTCTGAACGCTCCGGTCTTAATATAGTCTC
TGAATTCAATTTAGAAAATATAACGGAATTTGGTGTTGATAATTCAAGTACACTGAAAGA
TGCTTTGGAAGAAGAAATGGTTATTGATAATGAAAAACATAAACTGACTATAGATTACAA
TTTATACTGTAGATTCTGGAGTTTGCAAGAATTCTTCAGAAATCCTAATACTTGTTACAA
TAAACTCCAGTGGAAGACCTTTGTTGCACACTCTGGTAGTGTATTGTCCGCATTCTCATC
CTACAAGCTAGAGACAGTTGAGCTGCAGAAATCTAAAATGAATCGATTGAAGCCATTGAC
TGACGTGGAAATGCAGGGTCAAGGCAAAGAGCAGCATTACTTTGCAAAATTTCTAACCAA
TCAGAAATTGTTAGAGTTGCAATTATCAGATTCGAACTTCAGAAGATGCGTCCTCATACA
GTTTCTAATACTGTTTCAGTATCTGATGTCAACTGTTAAGTTCAAAACAGAAGCGCAGGA
ACTAAAATCTGACCAGTCTGATTGGATTAAAGATACAACCTCTCAGATTTATCGTTTGCT
CGGTGAGACTCCACCGAATGGGAAGAAATTTGCGGAATGCGTTAAAAGCATACTAAAGCG
AGAAGAACATTGGAACAACTGGAAAAATGATGGGTGTCCAGAATTTCAAAAACCCAAGCC
ACCGACACAATTGGACACCCCTGAAGATGTTAAGAAATCACGCAAAAGGCGTCGTCCGGT
CGGCGATATTGTTAAGGAATACGAAGGACAGAAGAAATCCTATATGGGAAACAATGAGTT
GACGAAACTCTGGAATCTGTGTCCGGATAATTTAGCGGCCTGTCGCACGAAGGAACGCGA
TTTCATGCCTTCGTTGGAGTCGTACATATCGAGCGCTTGTGACGAGTCGGGGCGGCGGCG
CACGGCGGAGGGGGG
(1515 bp)

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