SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp4586_c0_seq1
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		tRNA-splicing_endonuclease_subunit_Sen54_[Papilio_xuthus]
Ontology
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:4.72 TPM:4.75
ORF EntryO_BomoSK1789_complete:A_BomoSK_comp4586_c0_seq1
Sequence
(Nucleotide)
GTTTATTGGTAAAATAATACGATAATCTACATCTAATAGTCGGAATTAATTATTTTTTAT
TCCAAGAATTAACTTAAAAATTTCTTCTACCTCCTAATTGAGAAATGTTATAAAATTATT
GTAGGTAAAATGTATTTCTCTTCTGTGACTACCTATCTGAAACTGAAAAGTGAAATAATT
GAATTATTGAGGGTATGTTAAATTTTCCTAATTTTAAGACAAGCACATTTCTCTAACATT
GGAAAACAATGCCTGATCCAAAACTCCTATCAGGAGAAGAGTTAGTAGCAAAGGGTGTAA
CGAGAACTGAGGGTGCACTGCCCATCATTGGCCTCAAAGAAGTTGTACCAAACGGTTCTT
GGTTAGAGCAAAAACAAATACAAGTGGCTTTGGAAGCTAGAAAACATTTAATCGAAGTTA
ATAGGATAGAAAAACAAGGTAGTTTATCACATGCTGAATGGAGAAACGATTTAAGGCTTG
CTGAAGTAATTCGACAAACTGGTGGATACTGGCAGTTCTATGGACATCATCAAGGAAAAA
AATTGTACCTAAAACCTGAAGAAGCACTATTTTTAATGGAAAGTAACTGTCTGCGTCTTA
ACAATAATGGTATAACAATGTCATTACAAGAAGCATATTCAATATTACTTAATGAAGAAC
TGTTGTTACTGCAATATCAAGTTTATGCGTCGCTCAGTAGATTAGGATGTAAAGTCTACA
GACATGTTGTTAATAAGAAAGAAAAAACAAATTCTAATGAAGATAAATTAGGAAATACGA
TAACAAATAAAGATACTGATGTTAGTAGTGAAAGTAACATGGAAATTGATTATGGTATTA
CTGAAATTGGTACTCGAACTACTGAAAGACATGCTAACAAAAAAATTGATGATGGATCTG
AGATATCAAATAAAAATAGTGAAAACAATGCCTATGATGAAGTACAGTCCAATGATAATG
AAAGTATTGCTACCAGCAGCCAAGAAATTGATAACACTCACATTGTAGATTGTGAAAGCG
ATGATGAACTTACTGTTGTTATTGAAAATGATTCTTCCAAACAAAACAACAAAAATACAG
ATGTTGAAGAGTTGACACGTAAAGAAGTTCCTGGTAAAAACACTCACAGTATTGTTACAG
ACGTGTCAGCTGAAGGCGCTGGTAGCACTCGCGAATCGAATGACGAAACCGAACAAAATT
TAAACGAGATGAAGCTACGAAAGCTTTTGGAACGTAAATACAAATCCACTAATGCCAATG
CACTCGAAATTAATTTCAAAAAGATACCGGACTTTTATCAGAAAACGTTTGCGACCGTGA
AGGCGCCCGAAGAACAGTTCATACCTAAGAACATATATGTAAATAAAACGTCATACGTGC
TCAACGTTGAGAACCTTAAAACTAAAGACATTAGAAATACGTCGAGCAACTTATCTTACA
CATCCTCCGATGAACCAAACGAGTCGCTTAAGAGCATCGGGAACGGTTCGCGTAACGAAA
TACCCGCCGCGACGCATTTCTACCCGAACACGAGCACACCAAGAATGACCAATCAATACA
GACCTTACAACTGGTGGAGGCCGCGCGGGAACTTCAACTACTTTCATTTTAACATGTTCT
TTCAGAGGCCATACTTTCCTCAGTATTTCGTACCGAGGTTTCAGTTCCAACCGAGGGTGC
ATCCGGTTTTCAGATCATACCCGGACATGAGGAACGCCCACACGAACGTTGAAAACGCAC
AAGGCACGAGGAACTCCCGGAAACGACCACGCGACACACGGATGTACCATTTGCAAATAA
TCAAGAACCTCGCCGGGAGGCTGAAGAGGCTGATCGCTTCGGGGAATCTGCAGATATCAA
ATATACAGTCCATACAAAAAGTCATACAGACTTACAACCACAGTTACAAGTGTAAATTGA
CCCTCACCGATAACTTTGATCTCGTTGACGAGACGGTCGTTATTGAAACTATTGAATTGG
ATACCGAGGAAGAATCTCAAAATAAAAGGCAAAGAGTCAACGAAGACACCTTCACGGAAA
ACTTCAACAAGCTCAAAGAGCTAGCGTTGAAGTTGAAAGATTTGAACGAGAAAGACCAAG
TCACGTCTCGGCACCGAAGGGCATTTTCGAACGCCATTAAAACTTTCAACAAGTCTTTCA
ACGCAGACATATACATGAACAGCAACTACGACATGATCGACCGGAGGCAAGTGGTACTGG
ACACGAGCTCCGACTCCGAAGACGCATTGAATCAACCAAATGCGTTCACCAAGAAATTGA
AGAATCCATTTAATATTATAAAGCGTTTTAACGAAATTCGCAACGTGCAATGTACGATCG
ATAAGGACAACAACGGTGAACCGGAGTCGGATATTGTAAAACCATACGACACAAAACATC
GGAGACCAGACGAACTCAGTAAGCACTGGTATCCGAGTGATGATGATTTCGGTCGAGCGG
AAGTCGTCCGACGCGACAACGCACGCATTACAGACATTTTCAACAACGGCTACATCTACA
GTCTCATATCGGAGTGCCCGGATAAGTACGAAAGCTGGTTAGAAATTAAAATAGCTTTCT
TAAAATGTATCGAAATCACCAATAAACACTATAAGAATCAAATTCCGTCAACTAGCGCTG
ACACGTCTGCTCTGCAGCCCCTAGTGAAGCCAGGTGACTTCTCCGACTTGCCGAAGATGT
TGGAGAAATTGCAAATAATAACCGCAGACACTCACATTCCAGAGGAGACCAGCCTCCGAA
TAGATTTTGATGTTTACAACAGAAGTATAAAGAGTTTTAGAAAAAGCAACAAGCCAAAGC
CAGATTTCCGTTTGAGCTGTATCGACGAATCATGTTGCCTTCCATCAGCAGCGGATGTCT
CAGCTCTAATATCGAAATACGAAGACGATGTACCGACAATATTCGCCGTTGTAGGCCTAG
GCAGTATCTCATATGTACAAATAAAGCCAATCGTATTACCAGTGTATATGCCA
(2993 bp)

- SilkBase 1999-2023 -