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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp4336_c0_seq1
Scaffold_idBomo_Chr22
NCBI non-redundant
(nr)		PREDICTED:_5'-3'_exoribonuclease_1_isoform_X1_[Bombyx_mori]
Ontology
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:2.88 TPM:2.89
ORF EntryO_BomoSK1522_3prime_partial:A_BomoSK_comp4336_c0_seq1
Sequence
(Nucleotide)
AAATTACCCAGTTAAACTATGATGGTGTGACGTGTGGTGTGTGTGTGTACCGTCCTGTGA
TTCTCAAAATTAAAATAAAATTTGATCAATCAATCTATAAAATTAAACTCTCAGTTACAA
AAGTTGTAACTTTAGAATATAATCTTGGAGTGTTGCAATATCCAGTCCTGTGGGTGACGA
ACAGTGAATAAACTTAGTGCAAGCGTTTATCTCTAAATAAGGTTAACTGTTCCAGTGTTA
ACTATTGTCAAAAATGGGTGTCCCAAAATTTTTCCGTTATACCAGTGAAAGGTATCCTTG
TCTCAATGAGCTGGTAAAACAGTATCAGATTCCAGATTTTGATAACATGTATTTAGACAT
GAATGGAATCATTCACAATTGCTCGCATCCTGATGACTCCAACCCACATTTTCGTATCAC
TGAAGAGAAGATATTCACTGATGTCTTCCATTATATTAGTATTTTATTTCAAATTGTCAA
GCCAAAAAAATTATTTTTCATGGCTATTGATGGAGTTGCACCTAGAGCGAAGATGAACCA
GCAGAGAGGCAGAAGGTTCCGGTCTGCTAGAGAGGCAGAAAATTTAGAAGCAGAGGCTAA
AGCAAAAGGGGAAGTTCTGCCTACAGAGAAGAGATTCGACAGTAATTGCATCACCCCAGG
AACTGTCTTCATGGCACGCCTACATGAACAACTCAAATATTTCGTAAAGCATAAAATGTC
CACAGATCCACTCTGGTCCAAAGTTAAGGTCATACTCTCGGGACATGAGACCCCTGGCGA
AGGGGAGCATAAAATAATGGACTATATTAGATGGGCACGCTCGCAGCCCGATTATGATCC
TAATACAAGACATTGCCTGTATGGTCTTGATGCAGATCTCATAATGCTGGGAATGTGCAC
GCATGAACCACATTTTGCACTTTTGAGAGAAGAGGTTAAATTTGGTCGAACAACCCAAAG
GGCGACAACCCCAGAAGAGACGAACTTCTATTTACTACATTTATCTCTGTTGAGAGAATA
TTTGGAACAAGAGTTTATCGCGATAAAGGACAAGTTGCCGTTCCCTTATGATATAGAGAA
GATTGTTGATGACTGGGTGCTCATGGGATTCTTAGTGGGAAATGATTTTATACCTAATTT
ACCGAACATGCACGTCAATAACGATGCACTCCCACTATTGTATAATACTTACATGACCGT
GCTGCCTAAGTTGGATGGCTATATAAACGAAGCTGGTGATCTGAACTTGGAAAGATTCGA
GATATTTATGCAAGAACTTTCTAAGATAGACAAAGAAAAATTTCAGGACACCTACACCGA
CTTAAAGTACTTCGAAGAGAAAACGGGACGACGACCTAACGCTAATGAAAGGAGAGAGTA
CAAAGCTAATAACAATGAAACGTTCAACGTAGATGTAAATGAAATAAAAGGAAACCATTT
GGACAATGATCTGCAAGCACTCATAAATGCTACAGACAATATGTTTATGAATGATTTGGA
AGATGGTGAAGAAGAATACGAGGAAACGAGCGATGAGGAAGCCAACATGGAAATGGAGTT
TATTTTGCATAAAAAAGATTATTATATGAATAAGTTGGACTATTCGAAAGTTACAGACGA
AGTGCTGGCGGACCAGGCCGAGGGCTACGTGCGAGCCATCCAGTGGAACCTGTACTACTA
CTACAAGGGCTGCCCCTCGTGGTGCTGGTTCTATCCGCACCACTACGCCCCCTACATATC
CGACATTAAGGGATTCAAAGATCTGAAGATCGACTTCGAGCTCGGGGAACCGTTCAAGCC
CTTCGAACAGCTGCTAGCAGTGTTGCCGGCCGCCAGTAAGCATCTACTGCCGACCCCGTT
TCACGATTTAATGACTGATGAAGATTCGCCGATAGTACATTACTATCCCGTGCATTTCGA
TACCGACCTCAACGGGAAAATCAACGATTGGGAGGCAGTCGTACTCATACCGTTCATAGA
TGAGACTAATTTACTGTCAGCGATGGCTCCGTGCTACCAGCGGCTGACGGACGAAGAAAT
TAAAAGGAACCAGCCCGGACCGATGCTGGTCTACAGCTGGAGCTCTACTAGTCTAGGTGT
CGTCGATGCTCCTCAGTACTTCCCTTCGATCAAGGAGTGTCATGCGTTCGAGAAACGAGT
GTGGAGGAATGAACTGGACGTGCCCGAGGAGCAGCTGAAGAAGGGAATGTTGCCCAACGC
ACGTCGAGACATGCTGTTCCCGGGCTTCCCCACCATGAGACATCTCAAATATAAGTCGAG
TCATAAAATGGCAAAAGTGAAAGTTTTCGACCTGCCAGCTCGAAATAGTAGCGTAATTAT
TGAACTGATCCGAGATAAAGATGAGGATTCCCTGGAGAGGGTGGCGAACGAACTGCTCGG
TAAAGTTATATGGGTTGGGTGGCCGCACCTCACGAGAGCTAAAGTTATCTCGGTGTCAAA
TGAGAAGACGCGCCTGCATTATGTCGACAAGCAGAACAATAATGTGAACGGTACGTCGCT
ATACACCACGGTGCAGAACAGCGGTAACTTACACAAACAATGGCTCGGAGAGAGGAACAC
TATTATTGAGCATAACATGAACAGACTCGGCATAGAGTTGGGCGATGTCAATATTATAGT
GCACGCTGTTAATTTGAAAGGTTACAAGTATATCGTCCAAGACAACTG
(2688 bp)

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