SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp4139_c0_seq1
Scaffold_idBomo_Chr22
NCBI non-redundant
(nr)		(6-4)_photolyase_[Operophtera_brumata]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006094 P gluconeogenesis
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006975 P DNA damage induced protein phosphorylation
GO:0007165 P signal transduction
GO:0009881 F photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0031397 P negative regulation of protein ubiquitination
GO:0032922 P circadian regulation of gene expression
GO:0033762 P response to glucagon
GO:0042593 P glucose homeostasis
GO:0042752 P regulation of circadian rhythm
GO:0042754 P negative regulation of circadian rhythm
GO:0043130 F ubiquitin binding
GO:0043153 P entrainment of circadian clock by photoperiod
GO:0045744 P negative regulation of G protein-coupled receptor signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0050896 P response to stimulus
GO:2000001 P regulation of DNA damage checkpoint
GO:2000323 P negative regulation of glucocorticoid receptor signaling pathway
Transcript
Level		FPKM:0.63 TPM:0.63
ORF EntryO_BomoSK1367_complete:A_BomoSK_comp4139_c0_seq1
Sequence
(Nucleotide)
GTTCTTTTCATTTCAAATTACCTTAATGTATATTTATTTATTACTTAACAAAATTAAGAT
CTTATTCCTTATTAAACAATCAGATCATACTAAATTAAGATCTTGGTCTCTTTACTGCTT
TCTTTTCCCTATTCAGTTTATATGCAGTTGCCATTTTCTGTATATTCTCTTTATGTATTG
TATCATGGTTGACTATTCGTTTAGGATAGTGTTCTCCTATAATACATCCTGCATTTCTTT
GAATTGACTGAGGTGCTTTCCATGGTTCATATTTTTATGGTTATATTTCTTCATTCTCGT
GGATACTTCTTTAATTCAGGTACATACTTCTTAATGTAAACTCCCTCTTTATCAGTTTTC
TGACCAAATGCCACTGGACTATAAACTCTGAAATATTTGTAAAAGAATGCAGAAGCTGAC
AACCACATCCAATTACCAGCATTCAATGACCAGTCATAATCAAGTAGATAATCTTCAAAT
ATTTTAGCTCCTTCTTCCCATGATATCCAGAGATCACCTCGGGTTAAGAAGCAAGCCACC
ATGTGTCTAGCTAAATGATGGATCCAACCTTCTTGTTTCAGTTGCCTCATGATTGCATCA
ACAAATGGGTAACCAGTTTTACCTTCTGCCCAGGCTTTTAAGAAGGCGTCATTTTTTGTC
CAAGGTATTTGAATGCAAATAGCATTACCAACCATTTTGTCAAAATTGGCTACACCAGTT
CCTGCTGTATAATAAAATTCTCGCCACATTAATTGTCCCATCAGAGATACTGGTGGCAAG
GTGTGTTGTCTACCATTTTCCACCTCTTTGAGTTTATAATAAAATAGTTTTGCTGATAAG
CAACCATGACTAATATATGGACTGAGTACTGTTGTGCTTGGTTCAATACTATTTGGAGAT
GAATTTGGTTTTTCAAATTTACAAACCCATTCTTTTTTAGACATGTATAAATTCAAACGT
TTAAGAGCTTCTGTTTCACCACCATGATATTTCACAGGTGCTAATGTTTCTTCATCAATT
TGTAATTCCTTCAAATTGGGTATACTATAGTTTTCGGATTGTATATCAATTGGCTTGCAG
TGGCTTGATAAGACATTAGATATTTCTATTGGTTCCTTTACATTAATGCTCTTTACTAAT
GAAAGAAACTTTTGATACGTGAGTGGTACAGCTCCATTGTTCTCTCTCAAAACTTTATGT
ACATCATAAACTGTATGCTGTACTCTCTTGTTAATGAATACACCTTTCTTCTCAGCAATG
TCTTCAATGTATTCATCCTGCTGTACAAACTCAGGATCTATATCCACTTGACATGTTAAA
TATTTTACTTGCCAGTCATCAAATAACTTAGGCAATAGATCCACAGCTTTTCCTCTCAAA
ACATACAGACAAGTGTTTAATTTCTTTAAATTGTTATCTAAATCTTCTAAGCTTTGTAAC
AAAAACCGCAATCTATTTATGCCTACTTTATCTTTAATGTTTGGATCTAAAAAATAAATT
GGTCTGAGCAAATGTTTTCTGTTTTCTGCCTACATATTTGTTTTTGTTTTTGATGTATTA
TCTATGGTCTGTCTTTTCTTCCTTCT
(1586 bp)

- SilkBase 1999-2023 -