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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp3994_c0_seq1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		PREDICTED:_RNA_polymerase-associated_protein_Rtf1_[Papilio_xuthus]
Ontology
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007219 P Notch signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051568 P histone H3-K4 methylation
GO:0051571 P positive regulation of histone H3-K4 methylation
Transcript
Level		FPKM:7.18 TPM:7.22
ORF EntryO_BomoSK1211_complete:A_BomoSK_comp3994_c0_seq1
Sequence
(Nucleotide)
GGAAAACCAAGCAGACGCATTTTACGGCCGTTTTAGTGTTGAATTCATTCAAAATGGCCA
AAAGAAAGAATAAACCGTTGATCGATTCTGATTCAAGCAGCGAATGCTCAGATTTGGAGT
CACAACTGCTAAATCTCGCGAAAAAGAAGAAGAAAACAGATGTTCAACCCCCACCTAAGC
CAAGGAGCAGATCCTCAGGGAAGTCATCCGACAGTGATTCAGATGATGATAATGACGAAA
AACCTAATCACTCTAAGTCATCAGCATCATCGTCTGATTCTGATTCAGACAGTGACGCCA
AAAGCAATGCATCCAAGAGCAGAGACTCGCCTCCGAAGCGGGCTTCCTCAGATGAAGAGT
CGAAGGAGACAGAGCCAAAGAGATCTGAAACCAGGAAGAGCATTGAAAGTGCTGGATCGG
AGAAGAAAAAAGATACCTTCAGTGAGCCAGAGGAAGGTGAAGTATCTTCACATTCGTCAG
ACAATGACTCAGTTGACTCTGAAGAGGAATTTGATGATGGGTATGATGAAAATTTAATGG
GTGATGAAGAGGATAGAGCTCGTCTGGCTGCCATGTCAGAGAAAGAGAGAGAACAAGAGA
TTTTCAAACGTATAGAGAGAAGAGATTTAATGAAAACTAGATGGGAGATAGAACGTAAGC
TACGCTTAGCGAGACGTTCTGCGGCTGAACGATCTGCATCTCCGGGAGAAATAGCTAGAA
GGAGAGAGGCCAGGAAACGGAGGAGAGCCATGCGTGAACAGAGATTGAAGGAGAGGGAGA
AAGAGAAAGAAAGACAGCGGCAAGCTGCTGAAGCAGAAGCAGAGAAAGAGAAGGAAAAAG
AAAAAGAGCCCCAGAATGAACCAGAAGAGACGCCTCCTAGTCCTGGAGAAATACTGGACG
AAAGTAAAGATATGGAGCCCTCAGAGAGATCAGCCTCTCCGCTGTTTGGCTGTAAAACAG
AACGGAAACGCGCCGTGGATGACAAACGACAGAATGCTATGGCCGCGTTGCGAGCTCAAA
GGGCTTCGAGAGTGCAAAGGGCGCCGGCTGACGCTGAAGCAGATTTAATAGGCGGCTCGA
GCAAACAGACTGTGAAACTTAAAGCTTCAGATATTTATTCGGACGACTCCGGCTCTGAAT
CTGAAGATAATAAATCAGCTCGGAGAAGTTCCACGAGCTCATCCTCGTCCGGTGCAGAAG
AAGAAGAGAGAGAGAAGAAACGACAAGAAGTGGAAGTCAGATACGCCGACACCAGGGAAC
AAATCAACAAACTGCGCTTAAGCAGATTCAAACTGGAAAGACTGGTGCACTTGCCGTTTT
TCACTCGTGTAGTCACAGGGTGTTTCGTCAGGATCGGCATAGGGAATAACAACGGGAACC
CTGTATACAGGGTGGCAGAGATCATAGACGTGCACGAAACTGGGAAGGTTTATAACTTGG
GCAACACAAGAACAAATAAAGGCTTCAAATTGAGGCACGGAACTCAGGATAGAGCGTTTA
GATTGGAATTCGTCAGTAATCAGGAATTCACGGACGGAGAATTTCACAAATGGTACAAAG
CTTTAAAGGATGCGAACAAGAAGCCGCCCACCATGGACTTCGTCAGGAATAAGATCAACG
AAGTCAAGCAGGCGCTCATGTACGAATTTAAGGAAGAAGATATTGAGAAAATAGTGGCAG
AGAAGGAGAGGTTCAGATCTCACCCGACCAACTATGCGATGAAAAAGACGCAGCTTATGA
AAGAGAGGGACGTGGCACAACTGAGGGGTGACGATGAACTGGTGATGGACCTAAACTCCA
AGATCGAAGAGTTGGAGGAGCGTGCCAACCAGCTCGACAAGACGCGGACCTCGTCCATAC
AGAGCATCTCGTACATCAACAACAGGAACCGGAAGCTGAACGTTGAAACCGCCGAGAAAG
CTATCATGGAGGAGGTCAAAGCGAATAAAGGAAAGAAAACAGACGACCCGTTCACGAGGC
GACACACCAAGCCCGTCATGAACTTTAAATCACAAAGCAGCAGGAGTCAGGAGCTAATAA
GCAACCAGCAGGCCGCAGCTGTGGAAGCCCAGATACAAATTGAGGAAGAGAGGATGGAGA
AGGAGAAAATTGAGAGAGATAGACTTGAAAACCACGAGGAGGCGAAGAGGTCCCGCGGCG
AGCACCCCACGTCCAGCGACACCAGCCTGTACTCGCTGCACGACTTCGAAATTAACATAG
ACCTAGATCTACCTGCAGCAAAATCCGTGTCGAGCCAGCCGAAGCAGGTGACGACGAAGG
TCAAGGAGACGGGGCCCAAGCGCTCGCTCAACCTCGAGGAGTACAAGAAGAGGCACGGGC
TCATTTGAGTGTCGCCATCCCCCCGCGGCCCTCCGCCCGGCCCCCCGACTGGGAACCATC
CGGTGTGCTTTGAATTCGTGAAGATAATTAATACAAAAGTGAAGTTCAACTGTGGAAGTG
TATCAGAGCGAAAAGCGCGCGAGTGTTGCCAGGAATTTGAAGTTGTGTTTGTGCAGTGGC
AACACTGAACTCATTGCAATAGTGTCGAGTGATATTGAGCCTCTGTGAAGTTAATTTTAA
TCGATGATTGTGCGAACAAATATACATTAGGACTCGAATGATACGTTGATTTTAATGAAA
ATGTTTGAGTTATGGCGTCGTGATCTTACCGCCTATGGGACTTACATAACGAACCTACCT
TACTATAGACACACGTACTCATGTTACTTATTGCTCAGCCAAGTAACGTGCTCACGACTC
GTCTGGCGCTAAGTTGTTCGTGTAGCAACGCGAGCGCCGCCAGCCGCCTTGAGGCTTGAG
GTCTGCGTCTCAACAGTCATTATCAATTGAGGTTACCGCCCCCGCTCATTGCTCATGCAT
CATCATATCGAGGGTTGATAATTCTATTTAATGAATCAATTTCTTGGTATGGAGGCGTCT
TCAGTAAACACGCGATCGAAATACAAATTCCACCTTTAGAAATAAAGTGACTTAACAAGT
TCTTTTAAAGAAAATAAGTTTTATACTTTGTACGACTTACAAACAATAAAGTCGCTGTCA
AACCAAAATCTGCC
(3074 bp)

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