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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp3880_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_ATP-dependent_RNA_helicase_p62-like_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006417 P regulation of translation
GO:0010501 P RNA secondary structure unwinding
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0031047 P gene silencing by RNA
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050688 P regulation of defense response to virus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:7.57 TPM:7.61
ORF EntryO_BomoSK1102_complete:A_BomoSK_comp3880_c0_seq1
Sequence
(Nucleotide)
TTTTTCGGCTACACAACTATTTATTATCACATTAGTAAAATTAAACAAGATATTGAACAC
TACTTAATATAGCTGTAACTGCAAGGAAATTACATAACTTAGTAATATCTATCATTTCTA
AATCTGTTCCATTTTTTACTCGCATTATTACTAAAGTTGTACGGCTTCTGGAAGCTTTTC
TTTTTGTAAAATTTTTCAGTGGATTTCGTGATGTCAAACGAGCGAGCCAAGTCATACAAT
TCTTTGGGGATATCCTGTTTAGCTTCTTTCAAAACTTCTATTAAATCCTTTGCCTGTCTT
GCATTTTCTTCAGTGAGTATAGAATGAGATATGCCCTTGTTATCTTGACGCCCTGTTCTA
CCTATTCTGTGAATATAATCTTCAGATGTATTGGGATAGTCATAGTTTACTACGTGTGTC
ACTCCATCAACATCAAGACCTCTAGCTGCAACATCTGTAGCTACTAGTATATTAGTCTTT
CCAGTTTTAAATTTGTTGATGATCATATCTCTCTGGAGTTGTGTTCTATCCCCATGAATA
CCTAGAGCTGGCCATCCATTTCCCCGAAGCACTCTCTCAAGATAGTCCACAGATTTCTTA
GTGTTTGTAAATACTAATGTTTTACCAAAACCTAAACCAGATATTTTATGCATTATCTCT
GTAAACTTCTCGGCTTTTTCGTCTTGTTCACATACATGGACAATTTGTTGTATGTTGCGG
TTGGCAGACAACTCAGTAGAACCAACATTGACCTGGACAAATTCACCTAAATAATCTTTT
GCAAGAGTGCGGACTTCCTTTGGCCATGTTGCTGAGAACATCAGGATTTGCCTCTCTAGT
GGTACTCCTTCTAAAGCTTGACGTATCTGAGGTTCAAAACCCATATCCAGCATTCGGTCC
GCTTCATCTAGCACCACATATGTACACCTGCTTAATGTTGTTGTCTTAGTAATAAGAAAA
TCATTCAGTCTTCCTGGAGTTGCAATTACTATGTCAACTCCAGCTTGTAACTGTGCTGCT
TGTTTACTTCTATTTGCTCCACCGTAAATACAAGCACAGCGTATACCTAATTGCTCATTA
AAATCCTGTGCCACCTGCTCTATTTGTCTTGCCAATTCCCTAGTTGGGGCAAGAACCAGA
ACAATTGGTCCTCGCCCCTTTTTTGCTTTATTTTCTTTAATATGAACAACAGCTGGTAAA
AGAAAAGCCAATGTTTTTCCGGTACCTGTTTGTGCTATACCCACAAAGTTTTTACCACTC
AAAGCTATTGGCCATCCCTGTGACTGTATCACAGTTGGTTTTGTGATACCTTGCATCTTC
AGAAATGTTTTTATATATTCAGGAAATCCACTGGCTTCTATGTCAACAAAAGGACTGGGT
ATATCTTGACCAATAACAGTAATGCTATTATCACTTCTGTAATCATCATCTTCCTTTTTC
TGCTCAGTTTTTACAGAATAAAATCTTAAGATTTGTAGCTCTCGTAGTTTTGTACCTTTT
AATATTTGATTGTGCAATATAGAATATTGAACCTTGGGAATAATGTGAGTGTGAAATACA
TTTGTTTCTACTATTTGTTGTTTGTAAGGTAATAATTTGGACAACTCCTTTCGTTTTAAT
AACCTTGTGAGCACATTTAAAGCCATTTTCAATTTATTTTTGTTTTTAACCAGACATGCG
ATGAGCTATTTCAATGAAGAAGTTTAAATACGAATAGATAAAAACACATTTCCTTGCATT
AATATGTATCGCAAGCGGTTGAATAGTTCTGTACTGCTATATCTTTATGGTACCTATGCT
ATTAAACCACTTGTATCAAATTTATAATTTTGCTTTTAGTTCATAGGTAATATGTGCGTA
CATTGTACACAATTTTTCTTTACTTCATTAAATTCAGACTTCG
(1903 bp)

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