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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp3824_c0_seq2
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		ER_degradation-enhancing_alpha-mannosidase-like_2_[Papilio_machaon]
Ontology
GO:0001948 F protein binding
GO:0004559 F alpha-mannosidase activity
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006491 P N-glycan processing
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036509 P trimming of terminal mannose on B branch
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0097466 P ubiquitin-dependent glycoprotein ERAD pathway
GO:1904154 P positive regulation of retrograde protein transport, ER to cytosol
GO:1904380 P endoplasmic reticulum mannose trimming
GO:1904382 P mannose trimming involved in glycoprotein ERAD pathway
Transcript
Level		FPKM:6.46 TPM:6.50
ORF EntryO_BomoSK1033_complete:A_BomoSK_comp3824_c0_seq2
Sequence
(Nucleotide)
AATGATCAGCTGGAAACTATGGGAAAGTTTATGCAAATGTAAATAAATATAAAAGACAAA
AAAACTAATAAAAATGGTCAAATTAACCTTCCTGATCAGTATTTCAGTGTTGACTTGTAA
TTTAATTTTAAGTGTACGAGTATACAAACGTGCAGATATACTTAAACTAAGAGAGGAAGT
ACGTGAAATGTTTCAACATGCATACGACAGCTATTTAAGATATGCATATCCTTATGACGA
ATTACGTCCATTGAGCTGCGACGGTGTTGATACCTGGGGCAGTTACTCACTCACCCTCAT
TGATGCATTGGACACGCTTGCCATTATGGGAAACTATAGTGAATTTAATCGAGTAGTAGA
TATAGTACTACAGAAAAGACACTTTGATGCAGACATTAACGTTTCAGTGTTTGAGACGAA
TATTAGAATTGTTGGCGGTTTATTGAGTGCTCATTTACTGTCACATAAAACTGGGATGAA
ATTAGAACCAGGCTGGCCATGCAATGGTCCTTTACTTCGTTTAGCTGAAGATGTAGCACA
GAGACTAATAGCTGCATTTGATACAACTACTGGAATGCCTTATGGAACAATTAACTTGCG
ATCAGGTGTTCCACCTGGGGAAACTAGTATCACATGCACTGCTGGAGTTGGTACATTTAT
AATTGAGTTTGGTACTTTGAGTAGACTGACAGGAGATCCATTGTATGAAGAGGTAGCTTA
TAATGCTTTGAAAGCCTTATACCATCATAGATCACCAATTGGTCTCCTTGGCAACCACAT
AGATGTGATGACTGGACGCTGGACAGCTCAAGATGCTGGAATTGGTGGTGGAATCGATTC
TTATTATGAATATTTGGTTAAAGGTGCCATACTACTAGAGAAGCCAGAGTTAATGTCCAT
GTTCTTAGAAGCACGTCAATCTATTGAGAAGTACCTGAAAAAAGATGATTGGTTTGTGTG
GGCCACTATGTTGCGTGGGCACGTCACCTTACCTGTCTTTCAGTCTCTTGAATCATATTG
GCCAGGTCTTTTAAGCCTCATAGGCGAAAGTGACGCAGCGATGCGCATAATTCACAACTA
CCACAGCGTGTGGCGCCAATATGGATTTACACCTGAAGTGTACAATCTCGGGACGGGTGA
GGCGTCTTCGTCACGCGAGAGTTATCCCCTACGACCCGAACTCATAGAGTCAATCATGTA
TTTGTACCGAGACACCAGAGACCCTATACTGTTGCAAATGGGCGAAGATATTCTGAGGAG
CATACAGCATAGTGCCAGGACACCGTGTGGGTATGCAACGATAAAAGATGTTCGTGACCA
TCGTAAAGAAGATCGCATGGAATCGTTTTTCTTAGCCGAAACCACAAAATACCTGTACCT
ACTGTTCGATCCGGATAATTTCATTCACAACCCTGGGGTCCGCGGTACTGTCATCGACAC
ACCTAATGGCGAATGCGTGGTCGACCTTGGCGGATACATCTTCAATACAGAAGCACATCC
GATTGACCCTAACATGCTGTATTGCTGCCATGAAGCTAGACAAGGTATAAATATCAGCGA
GGTTTACAGTATATACCAAATTTTGGAAGAAGAAGATAATATAAAATTTATGACTATGAT
AGAAGCGAACACCAATGAAACTAAGATCACTCAATCGAACAACAACAATAATGAGAGTGC
AATAGAAAATAAAACAATTGACCACACAGAACCGAAGGAAAGATCAGATGAAAACGAGCC
TGAACAAAATCAAGTATTGATAAAAACTGAATCGAGAACCGGATACGTCAACCTCGACGG
AACGGAAAGGGAGAACGCAAACGAATCAAACCTCAGTGATCTTGTTAAAGAGACGATCAA
TAAATATTACAACGACACTATAAATGCCGAAACACAAGAAAATGTTAAACATTCAGCCGA
AGAACCAACGGCAGGATCGTCGCAAACCGTTGAAGTGGACGACATAATCGTGCCAGAGAA
ATCGGAGGTGCAACTGCCAAGCGTCACGAAAACGAAAGAAGTAATGAACATGCTGCCAAA
AGTTATACAAGACTTTTTGAACAGCGATTGGAAATCGAAACCGAAATGCGAACCGCAGAA
GATGTTAGAAAGGATACGTAGAGAACAGAAGTATCCAGATCACCCGGATGTATATAAGTA
CGAGTTATTATTGACGCCGGCTCCGTCGTTTCTACAAAGAATATCGTTGGCCGGAGAGTT
CTTAAATAAGAAGCAACTGGAGTTGTGATATTTTGTTCGACTGATTAAGTTTATAGGGGG
ATTTTTTATTTTAATTATTTATTGGTATTTTCATTAAAATATTTATTCTGTTTAAA
(2336 bp)

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