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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14253_c0_seq1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_Topors-like_[Papilio_machaon]
Ontology
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0003677 F DNA binding
GO:0003823 F antigen binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005814 C centriole
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016605 C PML body
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0016925 P protein sumoylation
GO:0019789 F SUMO transferase activity
GO:0032391 C photoreceptor connecting cilium
GO:0034504 P protein localization to nucleus
GO:0036064 C ciliary basal body
GO:0042127 P regulation of cell population proliferation
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044547 F DNA topoisomerase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051457 P maintenance of protein location in nucleus
GO:0061630 F ubiquitin protein ligase activity
GO:0070936 P protein K48-linked ubiquitination
Transcript
Level		FPKM:10.28 TPM:10.34
ORF EntryO_BomoSK19564_complete:A_BomoSK_comp14253_c0_seq1
Sequence
(Nucleotide)
GGCAATTTGGTGTTCAGAAAATCCATTTAAAATCCTTCACTAAACATCAAAGTAGTGATG
ATAATTTTCCTCAGTATTTTATTCGCTCATTCCCGTAACTCGTACACATATGAATGGACA
TAAAATATGTGTAACAACGTGGTTTTTAGCATAATATGTCAAATGTCCTGATTTAGTTGA
AATACATTATTTATCACGTCACACTACAAAGAAATCTGTCAGGTACCTATCGTCACAATA
ACGTTGAAGATTTGAGAGACATGATGTGGTGAAGCCACTGGAAATATCACGATAGGTAGA
TAGATAGATAACGTTGAAGATTTGAGACACATGATGTGGTGAAGCCATTGGAAATATCAC
GATAGGCAATCATGGCGACTATACCACAATCTTTGGATGATATCTCTGAAGCAAACCCAA
GCAGCATAAAGAGTGATGATAGCAGTCCACATCATGACAACAGCAGAGGGTCGCCACCTC
CTAACTGTGCAATATGTCTAGGAACATGTAAAAACAAATCATTCACTGATTCTTGCTTGC
ACCAATTTTGTTTCAACTGTCTTGTAACTTGGAGTAAGGTGAAAGCAGAATGTCCATTAT
GCAAGCAAAATTTTAAATCAATAATTTATAATGTTCGTGCCAATCAACAATATGAAGAAT
ACCAAGTGGAACAGCGCCAAGTTGAATCTAGCCAGAGAATTGATATTGATACACTCACAA
ACAGAAGGTTTAGATACAGAACTACATTGACATTGCCACGACGGCAGTCGATAGCCTTCC
AGCAGTTGTTGTTACGGCACTACCCACTTGTGGCAAATGTGTTGAGTCCACCACGTCGTC
GACGCTCTCCGGCTTCCTTCCGTCGCACTGTGTACCGACACAACCTGTGGGCGCGACCAC
TCCCCGACTTCACTGGACGGTTTCGTGACTGTACGCCAGAATTCTATAGATCTAATGCCA
CACAGTTACATCGTCTCGTGCCCTGGTTGAATAGGGAGCTTAGCTACTTATTAAATGGAA
ACGTAGGTCATATTTCTTACGTGCTGACCAGAATCTTGGAAATGTTGCCTCACCATCACA
TAACTTTCGGGACCGAGTTTCGGGAAGCGATGACACGTTTCTTTGGTGACAGGACAGACC
ATTTCTTACACGAGTTGTACTGCTTCGCGTCAACACCCTACGACATGACCGGATATGATC
GTAATGTGCAATACACGACTGATTCGCGTATGTCGACAATGGTCAACGAAGTGATATCTA
GCTCGGAGTCAGATGGAAGTGTCGACTCGGATATCGTGATGGTGTCGAGTTCATCTGCCG
CCGAACCTTCCGCCGGTCCCTCGGGAGTACCGCGAGCTCCGCCCCGGGCCGCCCTCGCAG
CCAACAATATCATTCCCATTGAAACAATTTCACATTCTGACACTGACGACGACTCATCCG
AAGTAATGGTCGTCGGCTATATTAAACCCCCTCAGGATCGAACTCCAGAACTCGTTGATC
TGGTCGGATCTGATAGCGACGTAGTGATCGCCGAAACCACGCAACCTCAACCTGGACCGT
CCGACACGAATGCCGGCCCTTTTGTGAAGCTTACTTTGAAAAGAGACCGTCCTGAAGGGT
CGAATTGGTCTGGTTCGGACTCTGACGACTCGTACCGTCCGCTAAGGCGTCGTCGCCGGC
GGCCGCGCTCCTCCGACTCCGCCACGACGGCAGACACGCGCCGCACCACGCCCGAACCTG
CCTCCTCCACCTCCGCTTCGTCCGACGCCGATCAGTCGTCAACAGACACGTCACTATCTG
ACGACAGAAAAACCGGTGCCACCAGAAAGAAGATCAGAAAGAGAAGCAGCAGGGAAGGCG
CAACATTTCGCCGGGAAAGAAATGGAAGTGGAAGACGTTCGTCGCCCGGTCAACGACGCG
ATAACAAAGTAAATACCGACTCGAGTCATCCGGATCGAGACCGACGAAGTAAAAAGAAGT
CACATTCAGGAAAAGGAGTGAAATGTTCTAGACGTCTCGAGGAGCCTCCCCCAGAAGCTC
GGCCGACGGAATCCGCGGGACGGAAGTTGAGGAGCGTCGTCACCGTCATGCGCGGCCGGA
CCGCCGGGCCCGACAGGAGGTCCAGCATCTCTGACTCAGACGACGACCTGCCTCTTAATC
TCACTGTACAGAAAAAGCAACCTCCCTCCTAGGGATAGACTGTTGGCTCACGTGTGTGAA
GTGAATCATAATTTATATGATAGACTTGTATAATATTGCGAAGTTACTCATATTAAAAAA
TACCCCAGTCGGTGTTGTGATATTTTGGTAAGAGAACATCATGGAACTACGACTGTGCCC
GAATGAAACTACAATTGTAGACGGTGGCGATGATATAGTTTGCACAATTTGTGGCTGCAT
TGTGTTTTGACCTTGTAGTGTCAATTTCAAATGAATTACAACCCAAAAGATGGATTGAGG
AGGATTAAACCTGAGTTATGAGATCACCATAGTTTTTTGTGCATATATATGTTTAAAAAA
CAACATTTCTTCAGGCATACATATGCAATTAGTTTTCTATTATGTGGATTGTTAAAATTG
TATATAAATCGTTTTGTCGAATTCTCGCTCATACCTAATTTATGTGAATATTGGCAGAAA
ATATTTATCAATTCTATTTGTGCTGATCATTTAAGAAGAGTTGTGAAACATAATAATAGA
AAAGAATAAAATACTTAATCCATTTTGTTTATAAGAAAACTGTACAAAAAAATAAAAAAT
ACACACCTGAGTTAGTATGTACTTGGACTGAACACTTCTTTGAATGTGTAGTTGTGTATT
ACCAGGTTTTTCGTGTTCTAACGTTTTGGTATTAATATACAGCATAATATAGCATATGAT
CCTAGTATGCAGCATCCCAGTATGCATTTCCTATAAATCTGAGTAATATATGTTACTCAC
TCGTGTTCCTCTTAATCCACTAGGGTGATTGCGTTTAAACGATAAACCCTCGTTAGTGCC
TCGTGACATTCCTGAGTTTAATATTTTTCAGCGCTCGTAGAATTGAATAGAGGTTTTTTT
TTAATAAATATAGTTTCGGAAAATTTAAGTTACGTCCAGTGCAACGGTGGGCTTTGTTTA
ATTGCTGTTTGAAGGGGGGGGGATAGCCGTTAAAACATTGACATTTCAACATTTCCCCTC
TTAGATATTCCCTTAGATATACCCATAAGTATTCATGCAGAATTGTCTAAAGCCTCAGTA
ACTTATTAACCAGGTGGCATGGGAGGGCATTCGAAAATCAAATGAAAATAGCAATTATAA
ACTCTAATATTTTACGGGTTCTTAGCACGATTTTCATATATAATGAGTTTCTGATCATTA
GACACTGTTGCGACAGCAGTGATCACAAGTAGACGGAAGACTGTGGTTAACTCAGGGTAA
GTTGTTAGATGCATTATACTAAAATTGTAGTAGGAATCCGTTACATAATAATGTTTGGCA
GATATCCGCGAAAGTTTATAAGATTTCCTAAAAAAGTAATATAACACAAAAACAGTGATT
ACGTCATATTTTGGTTTATTTTAATTAATGTACCTAATACTTAGTAGCAGGTTAAGGTGA
AGAAAAAGAAGAAGATAATTTAGCAGTTGACTTGCGGATTATCGCACGAAACTATACCCG
AAACCTGTTGGACTTAGTTTAGTTTTGTCATACATAGAATTAGCTTCCTTACTTAAGGAA
AAACTCATGGGGCAATTCGTTAACACGTTTATATATTTCAATTGAACAATTAGGTACGTC
CACTTCTCAAGTTAAACTTACTGACGATACGAGATTTTTTTCAGATTGATTTTTATTTTG
ACGTCTTGTCATAGGTATTATAAGGGTTGGTCGCACTTTAACCCCATGAGATATTCGTAT
TATTCGGTTGGTTGGTTGTATAAATACATTTTTCTTAACGAGATTTCGATATCTACATAC
CAAATTTTTGATGTCTGGTCGAAGAAAATCCAGTAGTTGATTGGCCCCTTTAACTAATCA
CCTTCTTGCAGTTATCTTTTTATAAACAAAACGGCTGTGGTAAATAAAACGGGTATATAT
TTATTTATCGTGTTTAATCAAAATCTAAAACTCTTACAACATAACAATGTATATGATTTT
AAGTTCCATTTAACAAAAAAGGTCATAAATCATTTGTATTCAAAAATAATAATTGCCAAT
AAGCATTCGAACTTAATTTACATTCGTTTGAATTTATCGATACACAAAATTAAATTAATA
AGCTACAAATTCATGAAACAAGCAAAATAATGATATTGCTTTAAAAAAAACCCTTCTGCC
TTAACGTTGATGATGATCATTATTGCTATAATTACTCCAAACATGAAGACTACACAGGAT
GTAGGGTAACCGTTACCAATAGTGGGGATTAAACACCCATAACCTAAGACGAAAACAAAA
AATCGCGATCCGAAATTTTGTGAATGTTTTCTTTTTTATTTATTACGGCTTTAGTAATAC
ATATTTTTAAAATGCCCGTAATGTAATATAATTAAGATTGCCCTTCCGCTCGTAAATAAC
ACGTCACATGACACACGGCGATCTGTTTTCGCTTTATAAGCCGTAATGAATACACTTAAC
AATTATTTGTGCTTAGCAATTCAATAAACGGTAATCTTACATCCCGAATTTGTTTTGTTT
TTTTAATTGTTCTATACTTTCTTAATTTCCTTTACCACCTACACACTGAACTGATTTTAA
TACTCAATAAGAATAGTTCGCTTAATACAGATCCACATTCCTGGACAAGCCGTCAATGCT
TACTTCTATCCTACTCACATCCCTTCCCTTCACCAAATTACAATTAAATTTATTTCGTTA
ATTTCGTCTTAAGTTAAAATACGTAGGACTTTATATTTAAAATATAATGAGCTTTATTGT
GACGACAAAGAAGAAATTCCGTTTAAATTCCTTTTTTATAGATTAGTATTGAAGTAAATA
TGGCACAACAGGTTACGTGTGATACCCATACGTAATGGACAAGAACAGTTTTTGGAATAT
GAGGAAGCGAGGAAATATTGTCCCAGAATTCGTTAAGGAATAATAGCACGTAAGGCGATA
CTAATTTCAAGTGGCGAAATTCTTAGCTATCATATCAGATACTTTATTCTACACTTATTC
AAGAAAAGTGTTGTGTAGCAGCCACCGAAACTGCCCTCTAACATCCAACATTGAAGTTGG
CCAGCATATGCTATTAAAATTAGACCTGCAAACTCTTCTGTGAATTAATTCACGAATTAT
AAAACTTAATATTTAGGTTAGTTTTCACTTCATTGAATATTAATTTAATTAATTTATATT
TTACGTCTTACTCTAAAATTACGTAAGCATTTTATAGCACCTAGCTTTATGACAACCGAA
CCAAATGATTAAATTATAAACCGTATTGCTTCAAATATGTATCCCTTTTTTCTAAAATAT
TTCCTGACATTAATATTTACAAAATATACAGTGATATAAACAGTTTACGATGCTAAAATT
TACATCGACTTTAGAGCCAGTGGCGTAATGTACATATGAGTCGACTATTATCA
(5573 bp)

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