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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14236_c1_seq8
Scaffold_idBomo_Chr16
NCBI non-redundant
(nr)		proteasome_26S_non-ATPase_subunit_4_[Bombyx_mori]
Ontology
GO:0000165 P MAPK cascade
GO:0000209 P protein polyubiquitination
GO:0000502 C proteasome complex
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006521 P regulation of cellular amino acid metabolic process
GO:0008134 F transcription factor binding
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0022624 C proteasome accessory complex
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0038061 P NIK/NF-kappaB signaling
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0042802 F identical protein binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043248 P proteasome assembly
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0050852 P T cell receptor signaling pathway
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090263 P positive regulation of canonical Wnt signaling pathway
Transcript
Level		FPKM:43.62 TPM:43.87
ORF EntryO_BomoSK19468_complete:A_BomoSK_comp14236_c1_seq8
Sequence
(Nucleotide)
GACATTGTCTATGATTATACAGCAATTTTTGTTCATTGTACGAATTGAATTGACTACCGT
TGTATTCGCTTTAATAAATATTAGTCTGCTGAAAAAATACTAAAATGGTCTTAGAAAGTA
CTATGATCTGTGTGGACAATAGTGACTACATGAGAAATGGAGATTTCTTGCCGACACGAC
TGCAAGCTCAGCAGGATGCTGTTAATTTGGTATGTCATTCCAAAACACGATCCAATCCTG
AGAATAATGTCGGATTATTAACTCTTGCAAACGTCGAAGTATTAGCCACACTTACTAGCG
ACGTAGGACGTATCATGTCCAAGCTCCATCGCGTCCAGCCAAACGGTGACATCAATCTAT
TGACCGGAATCCGCATTGCACATTTAGCTTTAAAACACCGTCAGGGAAAGAATCACAAGA
TGCGCATAGTAGTTTTTGTCGGTTCCCCTGTCAACACTGACGAAAAGGAACTCGTAAAAC
TAGCTAAAAGGCTAAAGAAGGAGAAAGTCAACTGTGATGTTGTTTCGTTTGGAGAGGATT
CAGAAAACAACCCCCTTTTGACTACCTTTGTCAACACACTAAATGGGAAAGACACATCGA
CTGGGGGAAGTCACCTTGTGTCTGTGCCAGCTGGAGGCTGTGTTGTGCTTTCTGAGGCTT
TGATAACAAGTCCTCTGATAGGTGGTGATGGAGCAGGCCCTTCTGGCTCTGGTTTGTCTC
CTTTCGAATTTGGAGTAGATCCCAATGTAGACCCAGAGCTCGCATTAGCTCTACGTGTGT
CGATGGAAGAACAAAGGCAACGTCAAGAAGAAGAGTCTCGTCGTCAACAGACCACAACTG
AAGGCGAAACTGGCACTGCCACTGAAGGATCAGATACAGCAGTAGAGAGAGCCATTGCTA
TGTCTCTCGGTCGTGATGCAATGGAACTCTCTGAAGAGGAGCAGATTGCGCTTGCAATGC
AAATGAGCATGCAACAAGAAGCACCCCAGGCTGAAGAGAGCATGGATGTTTCTGAAGAAT
ATGCAGAAGTTATGAATGATCCAGCATTTTTACAGAGTGTGCTTGAGAACCTTCCCGGAG
TAGACCCACAGAGTGAAGCCATCAGAAATGCTATGTCAACAATCAAGAAGGATAAGGATG
AGAAGGATGAGAAAGACAAAGACGGAAAAGGATCCACATCTAAAGAGAATTAGTTTATTT
ACTTTTTCATTTTCTTTTGAATAGATACATGTTTGTAAGCTTCAACATTGGAACATGACA
GTGTTGATATATCTATAAATTTAAATAAATAACACTTTATTGTACACCATCATTATTTCC
ACGAGATCCAATTCAAACCTTCAATTTTGTCATACACTGTAACAAAAGAGCCTCTGAAAA
ATAAAATTAGAATAATTAAAAATAAGTGATTTTCGATATGTATGCTCTGTTTTTTACTTT
TAAATATTTCTGCATTATTGAGAAGAATCAAAGCCAGCCTCATCTGCTTTCGATTATGCT
GCTTAAATTAACATGAATGGTGAAATAAATATTTCACATTACTAAATAGCTTACTGGACC
AAGGTGGTCACGACCCTCAGTAATGAGGAAACCGACGCAAGGAGGAGGAGGTACAATAAC
GCGTCATTTACGCTCCATAATATAAACAGTATTGTTGAGATGAAAATATGTGATTCCACA
TAAAAAATTCATACGACAATACTTAAAGAAAAAGGCTGAGGATATATTGCAGGGTACTTT
TGTATTTTTATACAAATACTGAATTCAATCAACAATATTGACTACCTACAAACTTCCATT
TTCTAATATGACCGATTCCTATAATCAGTGGCTCTTTTTATGTTTTCCTAGCAGCCTTTA
GCAAAATATGAAATCAAATGTAAATATCTAGTTTATTTATTTATGAAGACTAATCTTCAC
CGGCTGGTACGGCATCTTCTAATCTCTTCAAGTATTTCACTCTTAATTCTGTCACGGGAT
CACCTTTCAACTGATCCTGCACAAACCAGCATTGTACATCTAGTTGTACCATCTGTAGAG
CACCTCTGATTGCACCGGGAATCAAAGCGCAATATTTCAGGCCGTTATTACTTGGCATCT
CCACCCATTCACTGAGTGGACAATGGTCCCAAACAAGCGAAAACTCATCTCCGGCACTAC
TCCAACTTGTTACTGTCGGCTGCATGCTAAGGTATAGTTTGAAGGCCTGCTGTATTTTAT
CAGCAGTCTCTCTCATTTCTAAGCAGCGAGTAGACGTAGTCCGGGCCAGGAAGTCCTCTA
TCAGTCTAACGCCCATGTTGTATCCGATTCTCTCAAGATGTTTGTTTACATCTTCAGTGT
TTTCTGTTTCTTTCAGCATTTGAGACACTAAAGCCCCATATGTAAGAGTTAGGAGCTCGG
AATTAACTTTCTTGGCGTCCAATCTAGAAGTTTGCCGAGACATTTTGTAGAAATGTGTTG
AAGAATTTGTATAACTTTCTTTACAGTTTCGTAAAGTTCTCAAAGAACTTACTCATAACC
TACGCCCCCAAATCTAACTTTACTCAATCTTATATTTACGATATTTTGTTTAATGACGTA
GGTACCTACATG
(2592 bp)

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