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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14191_c5_seq2
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_protocadherin-15_[Bombyx_mori]
Ontology
GO:0001750 C photoreceptor outer segment
GO:0001964 P startle response
GO:0002009 P morphogenesis of an epithelium
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007601 P visual perception
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0007628 P adult walking behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0035058 P non-motile cilium assembly
GO:0035264 P multicellular organism growth
GO:0042491 P inner ear auditory receptor cell differentiation
GO:0048839 P inner ear development
GO:0050910 P detection of mechanical stimulus involved in sensory perception of sound
GO:0050973 P detection of mechanical stimulus involved in equilibrioception
GO:0051017 P actin filament bundle assembly
GO:0060013 P righting reflex
GO:0060088 P auditory receptor cell stereocilium organization
GO:0060122 P inner ear receptor cell stereocilium organization
Transcript
Level		FPKM:11.12 TPM:11.19
ORF EntryO_BomoSK18979_complete:A_BomoSK_comp14191_c5_seq2
Sequence
(Nucleotide)
GTCGACCGAAGCGACACGGGGGACTCGGACAAAGAGTAAAGCGTCGCGTTTGGCTGTCGC
GTTTGTACGTTGTTAAGCGTGGCGATTGAATTATAATAATAATTTTAAATAAAGTTCGTG
GACTTGTTTACGTATTTATTAAATAACATCAACAAAAAAATAATTGTGCTTGTGACTTTA
CCTTTTAATAGCGGTGAACGTGATTTTTGTAATACTTTAAGGCTCGTACTTAGTGATTAA
CAACCAGGATCTGTGAGTGTAGTTGTGGAAGCAGGTGTTGCATTCCAGGGGCGTTAAGGA
CGCAGCCTCCGCTTCAAATAGAAAGGTGAATTTGTCACTATCATCCTATTTTCGATATCG
AGATGGCGGCTAGATTATGAGGTCCGCTAACAAACGGCATTTAGATGAAGCAAAGCCGAC
GATCTAAGGAATGCTAATTCATAAGCGTTATAAATCTAGCTGAGATGCCGCGGTGGAGTG
CGCTGATCCGGCATGGACAAACATCGATATGGCTTTTCCTATGCCTGGTTTATCTGGTCA
TCGCCACTCCCGGTCCATGCGAAGTGGAAACGGGTCAATCGAGTATTATAGTCGATATCG
AAGAAAGCAGAGGAGATCAAGTTAACCAAAGCACGGTGCCAGCAATCTTGCCAGTAGTGG
GGGAGCCAGATGTGGATGTAGTATTATCGACAGTGTTCCCTAAGGGGCCAACGCTGTTTC
AGCTCGATGGAAAACGCTTACAACTACTCCAGCCCCTCGATAGAGACGCGGACAACCTCT
CACATATGGTCTTTCAGTTGGTGTGCCAAGTGAAAGCTACGAAGAAGCGTCGGACCATAC
CTGTGATAGTGAGAGTGTCGGATATCAATGATAATGCGCCCGTGTTTCAGGGGACTCCGT
ATGAAACTAGCGTCTCTGAGTTGGCTCCGATTGGCACGACGATATTCGAAGGGATTCGAG
CAGTTGACATCGACGCTGGAGTTAATGGCTTGTCAGAATACTTCATAATACAGGGAGATA
ACCAGACATTGGATTCAATGAACGCCGCTGACGGGTACAGCCATTTCGCCATTCCGATAC
CTCATGTTGGACACGTCACAGTTAACAAGAGTTTGGATTACGAACGAACACAGAAGTATC
TAGTCACTATTGTTGCTTCTGATCGTGCCCGTGATAACAAAAGACGGTTGTCAAGTACAA
CGACGCTAACAGTGAACGTTCAAGATGATGATGATCAAGATCCTTCATTCATATACAAAG
GCTGCACCCTACACGAAGGAGCTTGTTTCAACCCCGAATATGCCAGTTACGTGAACAGCG
GTATGCTAGCAGGAATCCTCTCATTAGAACCGGAAAAGATTCAAGCCGTCGACATGGATA
CATTGAACGCGAGGATACGTTACAGCATCGAGAGCGGAGAACCAGAGTCTTGGCCGGATT
ATTTCACTATCGACACGAACACCGGCGCTGTAAGGCAACTGGTGCCGGTCGATACAAGTA
TTGCGAAAAAGTTTCAATTGGTCATTAAGGCCGAAGAAGTATCAGAAGCGAAACGTTATA
CCACAGCCAAGTTGACCATCACAGTGCGGCCGGTAGACGCTAGTCCACCAGTCGTGAAAG
CTTCTTCAGATTTAGGGGAAGTCGAGGAAAACTCACCGAAAGGAACTAAAGTCTTGGACT
TAAACGGTCAGCCGATTGAGCTAGCTGTTTCTGATCCCGATCTGGGACCAGGAGATCCAA
TTCCGAACTACACGTTTGAACTAACCACTAATTTCTTCGACATCAAGGACGGATATTTGG
TTGTTGGTGACGAGACACTTGACAGAGATCCACCGAATCCAGGGAAATATAGAATTCAGG
TCGTAGCCCGCGAAGCGAACGGTGGAGCCGCCTCAGCTCCATATACCATCACCGTACAGT
TGCTAGACCAGAACGATAACGCACCAACCATACCTAAAACCCAACCAATAGTTGTACCGG
CCACTTTAGAACCCACCGCAGTGCATAAGGTCGAAGCTGTTGACATCGACGAGGGTGAGA
ACGCACGTGTGACCTATAATTTATATCACGTGTCTAATAATGGTGGCAACAAATTCACTA
TAGACCCTAACACGGGAGTTATATCAAGCACGGGGCGTCTCCAAGCCGGCGAACAATACA
GCGTTACAGTTCGAGCCACCGACGCTAAGGGCCTCAGTTCCCAGGGCATTGTGGAGTTAT
CCGTGGCCCCCGGCCCTAACACGAGCCCGCCGCAGTTCTCGTCCAGAGACTACTACGCGC
CCGTCTCGGAGGGCGCCGCCATTAACTCGACCGTCACCACGGTCACTGCAAAAGATCCCG
AGAACGAGCCTGTGACATACAGCATATTATCTGGAAACGATCTGAGACAGTTCGCAATCG
GCTCTAATACTGGCGTCATAACGGTCATTAGGAGTCTAGACCGAGAAGTTTTGACGAGAT
ATCAATTGGAGGTGAAAGCAGAAGATCCAGGGAAATTAGTGAGCACTGCGACCGTCAATA
TTAAAGTTACCGACATAAACGATAATAATCCGAAATTTGATGAGGAATTCTATACGTTTC
ATGTTAAAGAAGGGATGTCCGATGAATTCGTTGGGTACGTGCACGCGACGGACGCGGACG
AAGGCGTCAACGCGATCATAAGCTACAGCATCCCGAACAATTTGCCTTTCAACATCGACA
ACAACACCGGGATGATCAGCACCAAGACCAAACTCGACTATGAGAAGACGAAGGAATATT
CTTTCGTGGTAACAGCGACAGATGGCGCTATAGACAAACGTCTGGGAACAGCGTCGGTCG
CTGTACAAGTACAAGACATACCCGATGAAGCGCCAATATTTCCTTTGCCGCTGTATTCGG
TTCATGTACCGGAAAACGTGCCCAATTACCCAGTCGTTAAAGTTCAGGCAGAAGATCCCG
ATACATCTCCGGAGATAACGTACACGATAATGAAAGGCGATATGGATCTGTTTTCGATCG
ACCGCAAGTCGGGTCTGGTAAGGACTCTGCAGGCCTTAGATAGAGAAACATCGGCCCGAC
ACGAACTCATTGTTGGCACCGAAGAGAACAGCGAAGAAGGACCGGGCGCGACCACAACTA
TAGAGATTGTCGTTGATGACAAGAACGATAACTCGCCCATATTCACGTCAGTGGTCCGAC
CGGTCACGGTGGAGGACTCATCGTCTATAGGGAGTCTCGTGCAGACGGTCGTCGCCAGTG
ACGCAGACGCGACGTCACCGAACAACAGAGTCCGGTACAAACTAGTGGGTCGGGGTAAAG
CGTCCAAGTACTTCCACGTCGAACCCGACACCGGTGCGTTGAGGGTTCGCGATGATCTGA
AGAAGGAAACGGATAGCGAGTATACGGTGGACGTACAAGCTTACGACCAAGGCGATCCGG
TCATGTCATCGGTGACCAGTCTAACGGTGTACGTGAGCCATTCGGCAACCGTTCCACCTG
ACGTCGGCTTAGGTTTCGCTGATACAGTGTATACGGAACACGTTGCCGAGAACTCGCCCA
ACGGTACCCTAGTTAGAGTGTTGCCATTACTCAATAAAAGGGAACATTCCCCAGACACGC
CTCTAAAATGCTTACTCACAGAATCTTCGCAAAAAGGGATATTCTACGTGAAGCTGACAG
AAGACCGCGACTGCGCGATATACCTTAACACGAGTTCGCTAGACTACGAGACACTATCGG
AGTATTCTCTGGAAGTACAACTGGAGTCCATACAGGGTCTGATCAACCCCGACAGTAGTA
GAGCGCTCGTCAAAGTTCATGTGACCGACGTCAATGACAACCACCCCGTGTTTGTGTTCA
ACGAACAGTCCACTGTGGCCGCCGCGAAAGGGAAATACTTCGCTATTGTCAATAAAGAGA
TGCTTCTGGGCACCAACGTTCTTCAAGTAAAGGCGAAAGATCGGGACAGCGGCGCTTACG
GCAAGTTAGAATACCACAAGAACTCGTGGACCGAAGCGGCCGAAGAGTACTTCGGTCTGG
ACGCGGACACGGGGATCATAAGCAATATAAAATCGTTCGAGAACGTTCCAAAGGACATTC
TGCCGTTCAAGTTCAGCGTGACCGCGAGAGACAACCCTGATTCGCCACAGGACTATAATA
TAGCCAGAGCGTCGGTTGTGATAAACTTATTACAAAAAGAGAATCAACTGGTATTGGAAA
TAGCGGATTTGAATCCGGATGCGATGCGCCGGAGAGCCAGAAGTCTTCTATCGGTCATAG
AAGAGAAGAGCGGTTTGGTCGCCGGCCTAGAAAAGTTAACGTCGAGACATTATCTAGGAG
AGAATGGTACATTGGAGAGCGACAGCCGTGGGACCGACGTTTGGCTCTACCTAATCGAAC
CTAGTACTGGCGAAATATTGACTAGAGAATCTATGCCTGTGCAGAAGGCCATAGAGACTG
GGGTCCACAAAGCGGTGGCTGCTCGGCTTCAGTCTCCAGTCAGTGAAGTTCGAGCTCCTT
TATTAGCGGCCGAATTGCCGAAGAAGCCTCACATAGCAGCCGCGCCGCTCGCCACGGCCC
TACCCGCCGCCCTGATAGGCCTGGCCGCCGTCGTACTGGTCGCCGCACTGGTCGCCACCA
TCTACATCTGCGCCTCATGGAACAGGTATAAGAAACACAAAGAGCAAGCGGTTCAACAGT
ACGGAACTCTGAGTATGAGCATGCCGCCTCCTCGTCCTCCGTCTGGCTACGAGTCCAGTG
AAGATGACCCCGCACCGAGATATGAAACACAGGTACTCAATATGGCGGTCGATGACGCGG
ATCTGCAATTAGACTTCAGTCCAAACAATCACGCGTTCAATATACACAACGTTCAATATT
TATCCAAAGATAATGGTGAGAGAAGTCCAACGTTATCGGAAACAGCGACGACAGCTCGAG
CCTCGAGCGTCAATGAAAACGGGGGTACTCTGAACAAACTCCACAACAGCCACTACGATC
CTATCGCGAACAACGCGTCCATAGCGCGCAACACACAGACATTGAACCGAAGGATGCCGA
ACTCGCAAGCGTTGAACAACGCTCTCGGGACATTGCCCCGTGCCAACAATAACAATGTCG
GTGGTGGATTATTAGCCGCCACATTAGGTAGGAAGATCAACGGGAATAATCACAAGAAGA
AAACTCAACCCATAATGGCGTACGACGATATACCCGGAATGCAGAAAGCCTCTGACAACG
ACAACGTGACATTTGGCAAAAGAAACTTCTCTGGGTACCCATACGATCAATCGACTGTCG
AAACTACGACAGAGTTATAGTGAGAAATTTGTGAAACAATAAAATAATGATATCGAACAT
TGTAAGATGAAATATCCGTCCAATCAGTGGGTGAAGTGCTGTTTTAATATAAGCGAAATC
TTAAAGTATTGCTCTACTATATCCCTTCTATTTTGTGATCGTTTTAAATGACTATTCTTA
TTTTATAAATCTAATTAAATTATCTTCTAAAAATAAATATACATTGTATAATCTTTTCAG
TTATATATGATTTATTTATATTTATCTATTTGTACTATAGTTTAGGGGTACAAAAATACA
ACATTTTTGTGGTAGGGTAACGTTAATTTCTTTCCGGTTGTTTGTTATTAATTTCGTAAA
ATATTTTACATAAAAAAAATTGTACATAGGTTTTGTAATAAGCGAACTGAGCGACTTTAT
CATAAATGAACTCCCATTTCCATAAAAATATTTTTTTTTTTTATATTCAACCTCTTTTTA
ATTAGCTCGAGCGATTCTTCGTATAATTTTCTTCTTTTAATTTATTAATTTACGTATTCA
AAAAATGTATATGTTTAACAAAACTTTTGTAAAAAAAGTTTGTATTTAAATTTATTTACT
CTGTTTTATGATTTCGTTTTTAATAAAACTCGTAAAATTAGTATAATGATGATGATGATG
TGTTCAACGAATATAATAATTATTATACGACTGAAAAATGCTTCAAACTTAATATTATTA
TAATAATTTTTATAACGAATTTCTTAGCGGTACTTACTTAGCCAAGGCTAGTCTTTTAAA
TGAGAACAAATTGCGCGTAATGTTTTTTTTTTTTTTTATAAATATTATCTTGTAAATAAT
TGTGGCATTAGAAAGTGTATAGATAATGTTAATATACGAATAGTAACGTGTATAATGTCA
GATAAATATTTTTGATGAGGGGAACTTAACAGTGCAAAGGAATTGCTTCCGAAAACAATT
GGAAGTGATTTTTATTCCTCAAATGGTCAGATATCACTAGCTGAGAGGTTGAGCGATTTA
GTTTACAGATAAAAAAAATTATATCTATTTTAGACCTACTGAGTGTGAACTAATTGAAAG
CGATATATGTTTGTGTTATGTGTAGCAAATTAATATTGTTTTGCCCTTAAAAGCGGTTCG
TTTACTTGAATATGGTTATGAATAAGGATTCCCAAGGAGAATGTTAGTTTGTATTCTTTT
TTTTTTTTTTTTTTTAAAAA
(6500 bp)

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