SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14167_c0_seq3
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:14.18 TPM:14.26
ORF EntryO_BomoSK18747_complete:A_BomoSK_comp14167_c0_seq3
Sequence
(Nucleotide)
CGGACGTTCACGAAAATTTTCCGAACATGGCACGAAGCAGCAGGCAGCCACTTTGGTTCT
TTCGTCATCGTGTGCTGATTACTACTGAAATTTAATTTATAAATTGCTGAGTGGGGTGAT
AATAATTATGTTGTTTTTATCAAAGTGAACAATAAAATTGGTGATGTTGGGCTTAGGTTT
ATTATCATTTCGTCAGAAAACTACCAAAGAACACAAGTTCGTCGTAGAAAATCATAAAAA
ATCGAGAAAGCTTCAAACGTGTTTGAAGCTTTCGTTTTTGCATTAATGGAACTATGAACC
TGGACTCTTTAACGTTGAGCTTATCGCATATACATTATCTCGTCGTAAATTTAAACAAGA
AAAATTTCAAGCAGACGAGTCAAGAATTGAATCAGATTGTCAGTGTCTATGGCTTGGAAG
CAGAGAATCAAGTTTTAAGATGTCTTCTCACTGAAGCGGCAAGGATAGCTTGGGACGGAG
ACCGTACAACTTCTGCAGCTACTAATAGCATCCACGCCTCCCTTCTTGGACAACAGTTGG
CAGGCTTGCTCAATCATCCAGCTAAATCAACAGTTGTTTGCCGGGCTGTTGATCATCCAA
CACGCTCTGTAACAAAGCTATTAAAGCCTACAAATGCACTATTGAATCGACTATCTAGAC
TGTTGAAGTTAACTACAGCAGAGGATGTTGCCTTTTCATTGGCTCTGAGAAGGTATTCAA
CAAAGAGTGAGATAGTTGCAGTTGCAAAGCAGCACTTGAAGAAAAGATTCTTGGATTTAA
TACAGTGCTATCTCGACGCAGAACGGGGACATCAGGCGGAGCGTGCAGGACTTCAGGAAT
GCAGCCCTGAAGTGTTGCAGTCACTCCTCACGAGTCTCGCGCTCGACAATATCAAATTAG
CGGCAGTTACGAAGGATTTGTTTTTGAAGAGACTGAGATCAGACTTCCCTCGTGAAGTAG
TCCCGATAGTACTCGCACCGTTGATTTATCCGGACGACACTCAGACACCTCTCGAGGAAA
TGACTTCAGCCGATGATATGGCTGCTGCCATGATGGAGAATTCCCTGCCAGATATTATCC
GAGATATGGGCCATGCTTTTACAACTTCAGTTGAGGATTGCAAGAACAATATGATAAACT
TTGGTGCGAGAGAACCAACCGCAATAGACGTGGCTAGAATCATAGCTGTGATGGTTCGCT
ATCACAGTAACCAACAAGACGGTCCGCAAATACAGACACCAGGCAACTTTTGGATGAGTC
ATGAAGCTAAAAAAGAACCAGCTGCACATCCACACAGTGAATGGAATGCTGAAGTATTTG
TTCAGACATTAAAAGAATTAGCATCTAATCTGAACTGGAAGGAAGTGATACTACAGCTGG
ATCACCCAGAATTCTTTGTACCAGACCGAACAGGACTATCCCTACTATTCACCATACTGA
GACTTGGTCTACAGAGCGCCGGCTATCCGGCCAATATATTCCCCGTTGAGTATTTATGCC
GACGGTGGACGAATTTGGAAGGACAGATGAGTTTGATCAGCCACATTCTCAAACATTCTG
ACGTATTCTGTTTTGCCGATCATCCTTTTCATCCAGTATCAATAGACATTTTGAAATCTC
CTCCTGAGACCGACAACAAAGAAGTGGGCACTTGGCGTTGCCTCTACTTAGTGGAGTTAC
TGCTGTATGCTGCAGAGCGTGGTTATTACATGCAAGTCCATGAACTCTTTAAAATGCCAC
TTCAACATTGTCCCGATATTTTGCTCTTAGTTTTACTGCAAATCAGTCCACCGATTACTG
TCTTTAGGCAAGAGTTATTGACGACACTGATTCCAATATTTCTAGGTAATCATCCAAATT
CAGGCATAATTCTCCACCACGCCTGGCATACACAGAACCCTAACATAAAACCTATCATCA
TGCACTCAATGGCAGATTGGTACATACGCGGTGAGAGTGACCAATCCAAATTATCTAGAA
TTTTGGACGTCGCACAGGATTTAAAGGCGCTGTCGCTCTTATTGAATGTACAATCGTTCC
CGTTTGTTATTGATTTGGCTTGTTTGGCGTCTAGGAGGGAGTATCTCAAATTAGATAAAT
GGTTGACCGACAAAATCAGAGATCACGGTGAGACGTTTGTGTCGGCTATGGTGAAATTTT
TACAAAGGCGATGTCCACAGGTGCTCGGCAAGGCACCCGAAGAACAATTGCCTAAGGCTG
CGCAGCTGCCACCCGAAACGATTACAACAATGTTGGCTTGCTTACAACTATGCATTCCAA
ATGTTTCTCAAGAATTACAGGAGGCTATTTACAACGTAATAGGAAGCTGTCAGACGTTAA
TACTCAGCAAAACACGACAAAACATTGCGGGAATAGCAAGACCTCATACAAGGGTCATGG
AAACTCAATTCAATCCAGCTGGCCTAGGAGGGCAATTGTTTACACCCCACGTTGACGCTA
TCGGTAATTTGGCACCGGGCATGGCAAATATGACTTTAGGTGCCCCCGCGAATACTGCAT
TTGCTATGCCCGGTACACTCGGACCACTCGTAACCACTCCGGGCTCTCCTGTTAGGCTAC
TTGGAGGCGGACCTAACAGTCCGTTTGCCATGATGCCGTTACCGCCCAACGCAAACCTCG
GAGCGCTCGCGAGAATGGCTCCCGCTCCCGCGATTGATAAACCTCGTCTGCAGGATCCCA
TTCCCTTCCCGGAAGTGATGCACACCGTTGCTAAGGAAATCGAGGACGAAGCAAACAGTT
ACTTCCAAAGGATATACAATCATCCTCCACATCCGACTTTATCAATAGACGAAGTACTAG
ATATGCTCAAAAAATTTCAGGATTCCCCTAACAAGAGGGAACGGGAAGTATTCTCATGCA
TGTTGCGTAATCTTTTTGAAGAGTATAAGTTTTTCCCCCAATACCCCGACAAAGAGTTAC
AAATTACTGCTCAACTGTTTGGCGGTATCATCGAAAGAGGATTAGTCCCAAGCTACGTGT
CTTTAGGGTTAGCGTTGCGTTTCGTTCTTGATGCTTTACGAAAGGCCGAGGGATCGAAAA
TGTATTATTTCGGAATTGCGGCTTTAGATCGTTTTAAATCTCGTCTTAAAGATTATCACA
AATATTGTGAGCACGTTCGCGCTATTCCGCATTTTAGTGAATTCCCTCCCCATTTGATCG
AATATGTCGAATATGGCTTACAAAGCCAAGAACCTCCCAATAAACCCCAGGGGCCGGTAC
TTCCTGCTACGTTGGCTGCTATTCTTAATCAGAGTGCCGTTGTAACTGTCTCGGCGCCTT
ATAGGTACGTATCAGTTGGATATTACCAATATACTAACTTTAATGCAGCCCACGTAATGA
ATAGTGATTTTTTCCACAGGCCAGTAGTTTGTGCTCCTCCATCTATTTCGGTGATGTCGA
AAATGGCCGCGTGCCCTGCTGGAAGCATGGGTAGTAGGCCATCTATCGCGAACGCTACAA
ATATCGACACTCTTTTGACTGCTACTGACAGGGAAGAAAAAATTAATGCCCCACCAGAAC
CCATACAAGATAAAACTGCTTTCATTTTTAACAATCTTAGTCAACTTAATTTGCAAACCA
AATGTGAAGAACTTAAGGAAGTACTTACCGATGAATACTATCCCTGGCTTTCTCAGTACC
TTGTTATGAAGAGAGCCTCTATTGAACTCAATTTCCATGCTTTGTATTCTAATTTCCTTG
ATGTTCTTAAAGTCCGCGAAGTAAATAAATTAGTCACAAAGGAAACTTATCGCAATATCC
GTGTGTTATTGCGTTCAGATAAAGGAATCGCTAATTTCTCGGATCGATCGCTTCTCAAGA
ATCTTGGTCACTGGCTCGGCATGCTAACACTTGCAAGAAACCAGCCGATTCTCCTCCTCG
ACTTGGATTTAAAGGCGTTGGTCCTCGAAGCCTATCATAAAGGCCAGCAAGAACTGCTTT
ATGTGGTTCCTTTCGTTGCGAAAGTTTTAGAATCTTGCGCGAAAAGTGTAGTATTTAAAC
CTCCGAACCCGTGGACGATGGCCCTTATGAACGTTCTAGCAGAACTACATCAAGAACCCG
ACTTGAAATTGAACCTAAAATTTGAAATCGAAGTATTGTGTAAAAACTTAGGCCTGGACA
TAATGGATTTGAAGCCTTCCCTTTACTTGAAAGACCCTGAAAAATTGAGGCAGATTGAGT
TCCAACTATCACAGCCGAAGCCAAACAAAGAAGCCGCAAATACAATGCCGGTCAACCCGC
CAATTCAAGTACCACCGCCGCAGATACCAATAATGCCGCCTCAGCCTCCGATGATTCCTG
CTGAAGAAATGGCAGGACCTGTCCCTCCTCCACCAACTGGCTTAGTGCCCGCCGATCCTG
GTCTGATGGGCGTGCTCGGTATGCCAGAACCCAGGTTCAACTATTTGGATGTGAACGTAT
CCTCCACGTCTGCGTTCGGACAAAAGATTTGTTTCAACCCTCACATAATCTTATTCCAAA
ACTACCCGCATCTTAAACAGTTTGTAAAGCCCGCGATCGAGAGATCGATCCAAGAATGGA
TTCACCCAGTCGTTGATAGGTCTATCAAGTATGCTTTGACAACTTGTGAACAGATCATAC
GGAAGGATTTCGCATTGGACCCTGACGAAGTTCGAATGCGTACCTGCGCTCATCACATGA
TGCGCAACTTGACTGCCGGCATGGCAATGATCACATGCCGAGAGCAGATCATCACCACCA
TCAGCACTAATCTGAAGGCAGCTTTCATCACTGCTCTCATGCCATCAACACAACAACAAA
AAGAAATCATCGAGAGTGCAGCTGCTGTCCTTGCTACTGAAAACATGGAACTGGCCTGCG
CTTTCATTCAGAAGACAGCCGTTGAGAAGGCTCTACCTGAATTAGACAAACGCTTGATTA
GCGATTACGAAATGCGAAAACTGGCCCGTCAAGAAGGCCGCCGCTATTATGACACCATCG
TCGTGACTTACCAGACTGAAAGGATCCCGGAAAGAGTCCGCCTGCGCGTCGGAGGTCCGA
CAGACATGCAGATATCAGTATACGAAGAGTTCGCATGCAACATTCCGGGATTTGTCCCCG
TCAGAGATGCGGGCATGTTCATCCCGAAGCCGTCTCAAGAGCAGATTCCACAGCTGTTCA
TGAATCCAGCTCAAGTGTACGGCGCTGACGAGATGGGCGCTCTGATAAACACTGCGGAAC
TATTCCTTGCCAATTCCTTAGGTGTGGCTTCCTTGGCTGTCCAGGCAGCGAACATGCATA
CGCTGCTCGAGTGCTTGTTTATGGCGAGACGGAGTCGCGATATTGTGTCTGGCTGTACTC
TACTGCAGAAGGCTGTAGATGGTTTGCTTGATGGACATTTAGTCCCACCCGGTGCGAGCA
ACGAACACATCGAAATGATGGCCCGCTACCGCGACATCCACCTTCGTGTCCTGAAACTAC
TCGAAGACGCCAGAGTCTATGGACACGTTTGGACTTCCAAGCAGATCACCTGCTGCTTGA
TTGAATGCAGGGAGGAACTCCGATACAATATCGAGGCTGTTGACTGCCTTATCAGAAACC
ATTTGGTTAATCTACCACAGTATGATATCGCCCTTGCTCATATGATGGACAATGGCAATA
ACTACGTGGCGGTAGCATTCGCTATGCAACTAGTACAGCTGTATCTTGTCGATGACAGAA
ATAACATGTACGTTAACGAATCTGACTTGTACCACACGACCGAAATGTTAGTGAGGGTCA
TGTCCCACTCAAGGACGCCTCCGCCCGAGGGTCTGGGCTCCCTGATCGAGATTTTGAGGG
TGAATCAGGACCCTAGTGCATATTTGGGCGAAAGGTCACCGCTCGGACCGACGGCCCACA
TACATTCTGGAATACTGCAAGTTCGAGCACAAAACTATGACGACCCACCCGGACTTCAAG
AGAAGACTGAGAATTTACTCCGTGAATGGAGGAATGTTCTCCTCAGTCCTCTGACAGAGA
TCGAACTGGCGCAGAACTTCAACTTGTATGTCCACCGAATGAACATGAACGGCATTCTCA
AATCTGATGACATGATCGCTAGATTCTTCAGAATGGCCTCGCAGATGTGCATCGAGAATG
TATACCAACTTCTGAACGAGGACAGGGTTAATCCACCTCCAGTGCCTCAGAAACGTGAGA
AATTCTACACCATGTGCGACTCTTTTATCAAACTTGTCTCGCTTTTGATCAAGAATACAG
CCGATAGCGGAAATCCCACTCCGAAATTAAACCTTCTGAACAAGATTCTAGGCATTATAG
TTGGCTGGCTACTCCAGGACCACGATGACCAGGGCACCAACTTCCAGCAGCTACCGTACC
ACCGCCTACTCCTGATTCTGTTCCTCGACATGAACATGGCTGAGCCTGTTCTAGAATCTA
TGAACTATCAGGTTCTGACTGCGTTCTGCCACACCCTTCGCATTATCAAACCAAGTGTCG
CTCCCGGATTCTGTTACGCGTGGCTCGAGATTGTGGCCCACCGTGCCTTCATAAACCGCG
TCCTAGCTGTTACTCCACAACAAAAGGGCTGGGGAATGTACTCGACCTTACTCATTGAGC
TGTTCAAATTCCTTGATCCATTCCTGCGTAACACTGAGCTTGCTCCTCCGGTCATGACGC
TATACAAAGGAACCCTCAAGGTGTTGTTGGTCTTACTCCATGATTTCCCGGAGTTCCTGT
GCGATTACCACTATGGTTTCTGTGACGAAATCCCCCCGAACTGCATTCAAATGCGCAATT
TAATACTGTCCGCTTTCCCGCGGAACATGAGGCTTCCCGATCCGTTCACGCCGAATCTGA
AAGTTGACTTGCTCCCGGAAATTGCTCTACCGCCTCGTGCGGTCATCAACTATTCTACGA
TCATCTCTGCGTCACAGTTCAAGAAGGATTTGGACGCGTACCTCAAAGCGAGAGCTCCAG
TTACCTTCCTGTCTGAATTAAGGGGAAATATGCAGGTTGCGAACGAGCCTGGCAAGCGAT
ACAACAGTCAGCTGATGAACGCGGTTGTCTTGTACGTCGGCACACAGGCCATTGCCTATA
TTCGTGCTAAAGGGCAAACTCCGAATATGTCGACGATTGCACATTCAGCTCACATGGATA
TCTTCCAGAACTTTACCGTGGATTTCGATTTTGAAGGCCGGTACCTGTTCTTGAACGCGA
TAGCCAATCAGCTGCGTTACCCGAACAGTCACACGCACTACTTCTCTTGCTGTCTCCTCT
ACTTGTTCGCGGAGGCCAATTCGGAAGCAGTACAAGAACAGATCACCAGGATGCTCCTGG
AACGGCTGATCGTCAACCGTCCGCACCCTTGGGGTCTGCTCATCACTTTCATCGAACTAA
TCAAGAATCCCATCTACAAATTCTGGTCCCACGAATTTGTACACTGCGCTCCGGAGATAG
AGAAGCTGTTCGCTTCGGTGGCGCGATCGTGCATCGCCGACACAACGGGTGGGGGAGGGG
GGGAGAGGGAAGCGGCCGAGTAGCGCCGCGCCAATTGGGAGTCTCTCCGGCATAAGCAAG
GGTACAAAAGCTATGCTGAGAAAGGCTTCCAATCTGAGGCTAGCACGAGCCAGGCGCCTC
AGCCGCAGCCGTCCACCTCTACCCAACCCCCCAAAGGCCCAATGCAGTGGAACAAGCTGT
TCAAGAAGTAAATGACTTTTGAAACAAGTGAACGTTTTCTCTAAAGACACTGTGATAGTG
AAATGTGTAGTGTAAGTGTTTATATCTTAATCCTTAAACAACGGTCACAAATGGTTTATA
TATAATATATATATAAATAAATTAATTGATGCATGTATAAAAATAAAAAATAAATCTTTC
AATGATTATTACTAAATTGTGAGTTATTTGAAATTGGCAATGAAAATATTTGAATTATTA
TGTATTTTTTTATTTATTATTAATTGTGTTTAATTTTTGTTAATTGAAAATAGTAATTTA
ATATTTGTATGTTATCTTTATAAAATTGAAGGAAATAAAAAGTGGTTTAATATTTAAAAA
AAAAAAAAACAATGTTTCTTACGTAACTATTTGTGGCCTAAATGTGATTATCGGACGCGG
CGTTGTCTCGGCTCTGACATAATAACGGTTCAAAATGTGTACGGATTAACGTTTAATTAA
TGTTTAAATAAAAACACGAACATGATTGCATCGGAATGTATGGAGACTGGCTTCGTGTCA
GAACCTTGTAAATTTTACACGTTTGTCTGTGATTTTACAAAACGGCACGGACACATTGAT
GTTGCGCATTTTATTTTAAGCGTATTTGACTAGTATCAAAGCCGGCAATGT
(8331 bp)

- SilkBase 1999-2023 -