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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14167_c0_seq1
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X3_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:2.99 TPM:3.01
ORF EntryO_BomoSK18745_complete:A_BomoSK_comp14167_c0_seq1
Sequence
(Nucleotide)
CGGACGTTCACGAAAATTTTCCGAACATGGCACGAAGCAGCAGGCAGCCACTTTGGTTCT
TTCGTCATCGTGTGCTGATTACTACTGAAATTTAATTTATAAATTGCTGAGTGGGGTGAT
AATAATTATGTTGTTTTTATCAAAGTGAACAATAAAATTGGTGATGTTGGGCTTAGGTTT
ATTATCATTTCGTCAGAAAACTACCAAAGAACACAAGTTCGTCGTAGAAAATCATAAAAA
ATCGAGAAAGCTTCAAACGTGTTTGAAGCTTTCGTTTTTGCATTAATGGAACTATGAACC
TGGACTCTTTAACGTTGAGCTTATCGCATATACATTATCTCGTCGTAAATTTAAACAAGA
AAAATTTCAAGCAGACGAGTCAAGAATTGAATCAGATTGTCAGTGTCTATGGCTTGGAAG
CAGAGAATCAAGTTTTAAGATGTCTTCTCACTGAAGCGGCAAGGATAGCTTGGGACGGAG
ACCGTACAACTTCTGCAGCTACTAATAGCATCCACGCCTCCCTTCTTGGACAACAGTTGG
CAGGCTTGCTCAATCATCCAGCTAAATCAACAGTTGTTTGCCGGGCTGTTGATCATCCAA
CACGCTCTGTAACAAAGCTATTAAAGCCTACAAATGCACTATTGAATCGACTATCTAGAC
TGTTGAAGTTAACTACAGCAGAGGATGTTGCCTTTTCATTGGCTCTGAGAAGGTATTCAA
CAAAGAGTGAGATAGTTGCAGTTGCAAAGCAGCACTTGAAGAAAAGATTCTTGGATTTAA
TACAGTGCTATCTCGACGCAGAACGGGGACATCAGGCGGAGCGTGCAGGACTTCAGGAAT
GCAGCCCTGAAGTGTTGCAGTCACTCCTCACGAGTCTCGCGCTCGACAATATCAAATTAG
CGGCAGTTACGAAGGATTTGTTTTTGAAGAGACTGAGATCAGACTTCCCTCGTGAAGTAG
TCCCGATAGTACTCGCACCGTTGATTTATCCGGACGACACTCAGACACCTCTCGAGGAAA
TGACTTCAGCCGATGATATGGCTGCTGCCATGATGGAGAATTCCCTGCCAGATATTATCC
GAGATATGGGCCATGCTTTTACAACTTCAGTTGAGGATTGCAAGAACAATATGATAAACT
TTGGTGCGAGAGAACCAACCGCAATAGACGTGGCTAGAATCATAGCTGTGATGGTTCGCT
ATCACAGTAACCAACAAGACGGTCCGCAAATACAGACACCAGGCAACTTTTGGATGAGTC
ATGAAGCTAAAAAAGAACCAGCTGCACATCCACACAGTGAATGGAATGCTGAAGTATTTG
TTCAGACATTAAAAGAATTAGCATCTAATCTGAACTGGAAGGAAGTGATACTACAGCTGG
ATCACCCAGAATTCTTTGTACCAGACCGAACAGGACTATCCCTACTATTCACCATACTGA
GACTTGGTCTACAGAGCGCCGGCTATCCGGCCAATATATTCCCCGTTGAGTATTTATGCC
GACGGTGGACGAATTTGGAAGGACAGATGAGTTTGATCAGCCACATTCTCAAACATTCTG
ACGTATTCTGTTTTGCCGATCATCCTTTTCATCCAGTATCAATAGACATTTTGAAATCTC
CTCCTGAGACCGACAACAAAGAAGTGGGCACTTGGCGTTGCCTCTACTTAGTGGAGTTAC
TGCTGTATGCTGCAGAGCGTGGTTATTACATGCAAGTCCATGAACTCTTTAAAATGCCAC
TTCAACATTGTCCCGATATTTTGCTCTTAGTTTTACTGCAAATCAGTCCACCGATTACTG
TCTTTAGGCAAGAGTTATTGACGACACTGATTCCAATATTTCTAGGTAATCATCCAAATT
CAGGCATAATTCTCCACCACGCCTGGCATACACAGAACCCTAACATAAAACCTATCATCA
TGCACTCAATGGCAGATTGGTACATACGCGGTGAGAGTGACCAATCCAAATTATCTAGAA
TTTTGGACGTCGCACAGGATTTAAAGGCGCTGTCGCTCTTATTGAATGTACAATCGTTCC
CGTTTGTTATTGATTTGGCTTGTTTGGCGTCTAGGAGGGAGTATCTCAAATTAGATAAAT
GGTTGACCGACAAAATCAGAGATCACGGTGAGACGTTTGTGTCGGCTATGGTGAAATTTT
TACAAAGGCGATGTCCACAGGTGCTCGGCAAGGCACCCGAAGAACAATTGCCTAAGGCTG
CGCAGCTGCCACCCGAAACGATTACAACAATGTTGGCTTGCTTACAACTATGCATTCCAA
ATGTTTCTCAAGAATTACAGGAGGCTATTTACAACGTAATAGGAAGCTGTCAGACGTTAA
TACTCAGCAAAACACGACAAAACATTGCGGGAATAGCAAGACCTCATACAAGGGTCATGG
AAACTCAATTCAATCCAGCTGGCCTAGGAGGGCAATTGTTTACACCCCACGTTGACGCTA
TCGGTAATTTGGCACCGGGCATGGCAAATATGACTTTAGGTGCCCCCGCGAATACTGCAT
TTGCTATGCCCGGTACACTCGGACCACTCGTAACCACTCCGGGCTCTCCTGTTAGGCTAC
TTGGAGGCGGACCTAACAGTCCGTTTGCCATGATGCCGTTACCGCCCAACGCAAACCTCG
GAGCGCTCGCGAGAATGGCTCCCGCTCCCGCGATTGATAAACCTCGTCTGCAGGATCCCA
TTCCCTTCCCGGAAGTGATGCACACCGTTGCTAAGGAAATCGAGGACGAAGCAAACAGTT
ACTTCCAAAGGATATACAATCATCCTCCACATCCGACTTTATCAATAGACGAAGTACTAG
ATATGCTCAAAAAATTTCAGGATTCCCCTAACAAGAGGGAACGGGAAGTATTCTCATGCA
TGTTGCGTAATCTTTTTGAAGAGTATAAGTTTTTCCCCCAATACCCCGACAAAGAGTTAC
AAATTACTGCTCAACTGTTTGGCGGTATCATCGAAAGAGGATTAGTCCCAAGCTACGTGT
CTTTAGGGTTAGCGTTGCGTTTCGTTCTTGATGCTTTACGAAAGGCCGAGGGATCGAAAA
TGTATTATTTCGGAATTGCGGCTTTAGATCGTTTTAAATCTCGTCTTAAAGATTATCACA
AATATTGTGAGCACGTTCGCGCTATTCCGCATTTTAGTGAATTCCCTCCCCATTTGATCG
AATATGTCGAATATGGCTTACAAAGCCAAGAACCTCCCAATAAACCCCAGGGGCCGGTAC
TTCCTGCTACGTTGGCTGCTATTCTTAATCAGAGTGCCGTTGTAACTGTCTCGGCGCCTT
ATAGGCCAGTAGTTTGTGCTCCTCCATCTATTTCGGTGATGTCGAAAATGGCCGCGTGCC
CTGCTGGAAGCATGGGTAGTAGGCCATCTATCGCGAACGCTACAAATATCGACACTCTTT
TGACTGCTACTGACAGGGAAGAAAAAATTAATGCCCCACCAGAACCCATACAAGATAAAA
CTGCTTTCATTTTTAACAATCTTAGTCAACTTAATTTGCAAACCAAATGTGAAGAACTTA
AGGAAGTACTTACCGATGAATACTATCCCTGGCTTTCTCAGTACCTTGTTATGAAGAGAG
CCTCTATTGAACTCAATTTCCATGCTTTGTATTCTAATTTCCTTGATGTTCTTAAAGTCC
GCGAAGTAAATAAATTAGTCACAAAGGAAACTTATCGCAATATCCGTGTGTTATTGCGTT
CAGATAAAGGAATCGCTAATTTCTCGGATCGATCGCTTCTCAAGAATCTTGGTCACTGGC
TCGGCATGCTAACACTTGCAAGAAACCAGCCGATTCTCCTCCTCGACTTGGATTTAAAGG
CGTTGGTCCTCGAAGCCTATCATAAAGGCCAGCAAGAACTGCTTTATGTGGTTCCTTTCG
TTGCGAAAGTTTTAGAATCTTGCGCGAAAAGTGTAGTATTTAAACCTCCGAACCCGTGGA
CGATGGCCCTTATGAACGTTCTAGCAGAACTACATCAAGAACCCGACTTGAAATTGAACC
TAAAATTTGAAATCGAAGTATTGTGTAAAAACTTAGGCCTGGACATAATGGATTTGAAGC
CTTCCCTTTACTTGAAAGACCCTGAAAAATTGAGGCAGATTGAGTTCCAACTATCACAGC
CGAAGCCAAACAAAGAAGCCGCAAATACAATGCCGGTCAACCCGCCAATTCAAGTACCAC
CGCCGCAGATACCAATAATGCCGCCTCAGCCTCCGATGATTCCTGCTGAAGAAATGGCAG
GACCTGTCCCTCCTCCACCAACTGGCTTAGTGCCCGCCGATCCTGGTCTGATGGGCGTGC
TCGGTATGCCAGAACCCAGGTTCAACTATTTGGATGTGAACGTATCCTCCACGTCTGCGT
TCGGACAAAAGATTTGTTTCAACCCTCACATAATCTTATTCCAAAACTACCCGCATCTTA
AACAGTTTGTAAAGCCCGCGATCGAGAGATCGATCCAAGAATGGATTCACCCAGTCGTTG
ATAGGTCTATCAAGTATGCTTTGACAACTTGTGAACAGATCATACGGAAGGATTTCGCAT
TGGACCCTGACGAAGTTCGAATGCGTACCTGCGCTCATCACATGATGCGCAACTTGACTG
CCGGCATGGCAATGATCACATGCCGAGAGCAGATCATCACCACCATCAGCACTAATCTGA
AGGCAGCTTTCATCACTGCTCTCATGCCATCAACACAACAACAAAAAGAAATCATCGAGA
GTGCAGCTGCTGTCCTTGCTACTGAAAACATGGAACTGGCCTGCGCTTTCATTCAGAAGA
CAGCCGTTGAGAAGGCTCTACCTGAATTAGACAAACGCTTGATTAGCGATTACGAAATGC
GAAAACTGGCCCGTCAAGAAGGCCGCCGCTATTATGACACCATCGTCGTGACTTACCAGA
CTGAAAGGATCCCGGAAAGAGTCCGCCTGCGCGTCGGAGGTCCGACAGACATGCAGATAT
CAGTATACGAAGAGTTCGCATGCAACATTCCGGGATTTGTCCCCGTCAGAGATGCGGGCA
TGTTCATCCCGAAGCCGTCTCAAGAGCAGATTCCACAGCTGTTCATGAATCCAGCTCAAG
TGTACGGCGCTGACGAGATGGGCGCTCTGATAAACACTGCGGAACTATTCCTTGCCAATT
CCTTAGGTGTGGCTTCCTTGGCTGTCCAGGCAGCGAACATGCATACGCTGCTCGAGTGCT
TGTTTATGGCGAGACGGAGTCGCGATATTGTGTCTGGCTGTACTCTACTGCAGAAGGCTG
TAGATGGTTTGCTTGATGGACATTTAGTCCCACCCGGTGCGAGCAACGAACACATCGAAA
TGATGGCCCGCTACCGCGACATCCACCTTCGTGTCCTGAAACTACTCGAAGACGCCAGAG
TCTATGGACACGTTTGGACTTCCAAGCAGATCACCTGCTGCTTGATTGAATGCAGGGAGG
AACTCCGATACAATATCGAGGCTGTTGACTGCCTTATCAGAAACCATTTGGTTAATCTAC
CACAGTATGATATCGCCCTTGCTCATATGATGGACAATGGCAATAACTACGTGGCGGTAG
CATTCGCTATGCAACTAGTACAGCTGTATCTTGTCGATGACAGAAATAACATGTACGTTA
ACGAATCTGACTTGTACCACACGACCGAAATGTTAGTGAGGGTCATGTCCCACTCAAGGA
CGCCTCCGCCCGAGGGTCTGGGCTCCCTGATCGAGATTTTGAGGGTGAATCAGGACCCTA
GTGCATATTTGGGCGAAAGGTCACCGCTCGGACCGACGGCCCACATACATTCTGGAATAC
TGCAAGTTCGAGCACAAAACTATGACGACCCACCCGGACTTCAAGAGAAGACTGAGAATT
TACTCCGTGAATGGAGGAATGTTCTCCTCAGTCCTCTGACAGAGATCGAACTGGCGCAGA
ACTTCAACTTGTATGTCCACCGAATGAACATGAACGGCATTCTCAAATCTGATGACATGA
TCGCTAGATTCTTCAGAATGGCCTCGCAGATGTGCATCGAGAATGTATACCAACTTCTGA
ACGAGGACAGGGTTAATCCACCTCCAGTGCCTCAGAAACGTGAGAAATTCTACACCATGT
GCGACTCTTTTATCAAACTTGTCTCGCTTTTGATCAAGAATACAGCCGATAGCGGAAATC
CCACTCCGAAATTAAACCTTCTGAACAAGATTCTAGGCATTATAGTTGGCTGGCTACTCC
AGGACCACGATGACCAGGGCACCAACTTCCAGCAGCTACCGTACCACCGCCTACTCCTGA
TTCTGTTCCTCGACATGAACATGGCTGAGCCTGTTCTAGAATCTATGAACTATCAGGTTC
TGACTGCGTTCTGCCACACCCTTCGCATTATCAAACCAAGTGTCGCTCCCGGATTCTGTT
ACGCGTGGCTCGAGATTGTGGCCCACCGTGCCTTCATAAACCGCGTCCTAGCTGTTACTC
CACAACAAAAGGGCTGGGGAATGTACTCGACCTTACTCATTGAGCTGTTCAAATTCCTTG
ATCCATTCCTGCGTAACACTGAGCTTGCTCCTCCGGTCATGACGCTATACAAAGGAACCC
TCAAGGTGTTGTTGGTCTTACTCCATGATTTCCCGGAGTTCCTGTGCGATTACCACTATG
GTTTCTGTGACGAAATCCCCCCGAACTGCATTCAAATGCGCAATTTAATACTGTCCGCTT
TCCCGCGGAACATGAGGCTTCCCGATCCGTTCACGCCGAATCTGAAAGTTGACTTGCTCC
CGGAAATTGCTCTACCGCCTCGTGCGGTCATCAACTATTCTACGATCATCTCTGCGTCAC
AGTTCAAGAAGGATTTGGACGCGTACCTCAAAGCGAGAGCTCCAGTTACCTTCCTGTCTG
AATTAAGGGGAAATATGCAGGTTGCGAACGAGCCTGGCAAGCGATACAACAGTCAGCTGA
TGAACGCGGTTGTCTTGTACGTCGGCACACAGGCCATTGCCTATATTCGTGCTAAAGGGC
AAACTCCGAATATGTCGACGATTGCACATTCAGCTCACATGGATATCTTCCAGAACTTTA
CCGTGGATTTCGATTTTGAAGGCCGGTACCTGTTCTTGAACGCGATAGCCAATCAGCTGC
GTTACCCGAACAGTCACACGCACTACTTCTCTTGCTGTCTCCTCTACTTGTTCGCGGAGG
CCAATTCGGAAGCAGTACAAGAACAGATCACCAGGATGCTCCTGGAACGGCTGATCGTCA
ACCGTCCGCACCCTTGGGGTCTGCTCATCACTTTCATCGAACTAATCAAGAATCCCATCT
ACAAATTCTGGTCCCACGAATTTGTACACTGCGCTCCGGAGATAGAGAAGCTGTTCGCTT
CGGTGGCGCGATCGTGCATCGCCGACACAACGGGTGGGGGAGGGGGGGAGAGGGAAGCGG
CCGAGTAGCGCCGCGCCAATTGGGAGTCTCTCCGGCATAAGCAAGGGTACAAAAGCTATG
CTGAGAAAGGCTTCCAATCTGAGGCTAGCACGAGCCAGGCGCCTCAGCCGCAGCCGTCCA
CCTCTACCCAACCCCCCAAAGGCCCAATGCAGTGGAACAAGCTGTTCAAGAAGTAAATGA
CTTTTGAAACAAGTGAACGTTTTCTCTAAAGACACTGTGATAGTGAAATGTGTAGTGTAA
GTGTTTATATCTTAATCCTTAAACAACGGTCACAAATGGTTTATATATAATATATATATA
AATAAATTAATTGATGCATGTATAAAAATAAAAAATAAATCTTTCAATGATTATTACTAA
ATTGTGAGTTATTTGAAATTGGCAATGAAAATATTTGAATTATTATGTATTTTTTTATTT
ATTATTAATTGTGTTTAATTTTTGTTAATTGAAAATAGTAATTTAATATTTGTATGTTAT
CTTTATAAAATTGAAGGAAATAAAAAGTGGTTTAATATTTAAAAAAAAAAAAAACAATGT
TTCTTACGTAACTATTTGTGGCCTAAATGTGATTATCGGACGCGGCGTTGTCTCGGCTCT
GACATAATAACGGTTCAAAATGTGTACGGATTAACGTTTAATTAATGTTTAAATAAAAAC
ACGAACATGATTGCATCGGAATGTATGGAGACTGGCTTCGTGTCAGAACCTTGTAAATTT
TACACGTTTGTCTGTGATTTTACAAAACGGCACGGACACATTGATGTTGCGCATTTTATT
TTAAGCGTATTTGACTAGTATCAAAGCCGGCAATGT
(8256 bp)

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