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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14166_c0_seq3
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		aubergine_protein_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:12.46 TPM:12.53
ORF EntryO_BomoSK18743_complete:A_BomoSK_comp14166_c0_seq3
Sequence
(Nucleotide)
TTTTTATTAATAAAAATGAAATTGTAATAAAAAAAAACATGAAAAACAAAAATCTTTTCT
AAAAGCTACATGTTGCATGTAAGTCAAAACTTATCACGAAACTTAGAACTAAAACGAGGT
AACATCGTTGATATAAAAGCCTTAAGTAACAGAGCAAAAAAAAAAAAAAAACTAATTATA
CGTTGGCTAGATTTCAGATCACTGCTTGTAGCGTGGAAGAATGCACTTGATTCAATTTGA
ATAACTTGTAATTTAATAATTATTCGTTTGCATTTCCACTCAACATCATTGTAGCCAAAA
TAAAAAGAAAAATTTGACAATTGTCAATCAAATATAAAATGAATCTTATGTAGTAAACAA
CTAGAACACTCATTACATTTTAATTATCGTAAAAACGAGTCTAGGTCACATGTACTACTA
CTACGCGCATTAGCTGCTTCTTGCTATGCCACACTAATCATACATCAAAAACGTCCAAGA
GAATGAGTCTTATTTAATATATCTTTTAAAAAACTATGAAATGAATTACTTTGAGCAATA
TTAAGCTCACGTTATGATTGCGAACTATTTCTAATAGAGTTCTATGATTTGTATGGTTAT
GCACATCGAAAATAGTTTCTCGGTGGGTACACTTACTTAATCTAGAAAAAAATAGGTTGT
CTTTAAAAATACTTAGAGGAAATATAAAGTTTCATTCAATGAATAATGCGGTTGGTTGTG
CAGACTGTTAGCTGCAAGGAATGCAAGTTTGTGGGCATATTGGCAGACCGATGGGACGCG
AACTTGGGAAGAGCAGTTGAAATACAAGTGTGTCAGTTTGTAGGTCAAACGTTGGATACG
ATCAGGATTGAGTCCTGTTGTATCTTCAATCACATTGTATGAGGTAGGAGCAATGGTACC
TTCACGTACATTTTGTGAAACCAGATAGAAATCATACCGTTCAGGCAAGGTGACGACGTC
GTCAATCACTGTGCCAGGGCGTGGATTTTCTCCGCTGCGACCACGTTGAACGAAGATTCG
GGTGTTAATACGTTTCGACACAATAATGAATGCCAACTTTATTTCGACTCCTGCATAAAT
TTCTGCCAATTTCTTTTTTATCTCAGCAACTTCATGGCTATGCACGTATGGGATTTGACC
ATCACCGACACCGTCGCGGTAAATGAAGATTCGGGCTGGGTAGGTCCCGTTTTTCTCGCG
GAATTTTTTGACAGCGGACGCGATATTGAAACCCATGTGAGAGCTGAGTTCTTCTCCGGA
AGTGTGCGCATTGACGATTGAATAGTACTGAGTCATCTGTTTGTCGAGGGTGGCTACGAA
GGCCCCGAAGCTCTTTTCTTTCGAACGAGTGTCGTGGCACACGTCGTACCCGACCACCAT
CAGTGACGGCAGTGGGATATCTACTGTCCACGGAGAACCCCCAAGCTTACAGTTTATTTG
AATAGCAACTTTTGTAGCAATTGACATAGCCGACTTGCTACTCATGTTACGAGCGCAGAC
TACCTGCGTCGGCACGGCTCGGTCTACAGTGCATTTCTTTTTTATGGCTTCATACCTATC
AGCATAATTCCTAGCCAGAACGCACAGTATCAGGGCAGGATTTTTCCTTGCAATCACTTC
TTCACACATATTAGCGTATTCTATCGGACCGTCATGACGAATCACAACTAAGTCAGGGCT
TCTCATTCGAAAACCAACACCTCCGCCAGTTTTTATTATGAGATCAATGAACGACTCTGT
ATCACGGCGTTGTCTTTCTGGGGTGATCACTACCCAAGAGTTTAGTTGGGCAATAGCCAG
GAGATGCTTCGATCTCATATCTCGCGTCCAGCCCTCGGTGGTGTCTCCTGCAGGGTATTT
AACATTATTTGCTTGTATTATATTTTCAGGTGGAAGTTGGCGACCCTTTATTTTTACCAG
TTCCTTAGATAGTTTCAACGACCATGTTGCCAGTTCTTCAACAACTTCAGGTGTGCTTGT
GAATCTCCTGTTGAAATTATTAAGCTTTTCAATGCGCTTGTCGGGCCCAATCTTTGTATG
GACGTCCAATGAGCGCATCAGCTTGAAATTAGCTCGCATCTCGTCGGAGAGGCCGGTCTG
ACGGCACAGTTCTGGCACTAGATATATCAACTCAGGCAGACCCGCACGAATCTCACGCGG
CTTCGACCGCGAAATCAGAAGCGGTTGACCCGGATCTTGAATGCGTAGATTGTATTTCTT
ATAATAGTATTCAATATAGGTAATGTTTTCGTCACGCATTTTAAATGTGGACTTCGGCGA
CACATTCCAAGCTACATCGTCAACTCTGTAAGTTCTTTTATTGTAGTCAGTCATTACAAT
TTTTCCAACAACATCTTCTAAAAATATTTTTTTGTAATTATTGCCTTTTGTTGCGGCATA
TTCACTCAACATTTGAAGAACAGTGTCCATGCGAAGCACCTTATGGGCGATTTCAGTGAC
CAACAACAAACGATCTTCATATTGATTGATTGTCGTTTTATATCCTGGCCAAATTTGAAG
CTTGAATTCTGGTATATCAATCTTTGCTTCAGGGTCAAAATAATCCCGTCCCATAAGCTG
TAGCTTCAATAAATTAAAGCATTTCCTTATAATGATGTTAAAGATTTGTATATAGTGATA
GTCTCCAGGGCTAACTTCGCAGGTCAGCTTAATTAAGATTCGCATACGTTCGTTATCCGT
TTTACGATCAGAATATAGCTCCATCGGATCAGGATGCAGACGATTTACAGTGTACAACAC
AGTGCCATCAAAGAGATATCCTCCGAGTGTTTTGCTGTGAACACGCATCAGTGCCTTTCG
GACTCCAGTGCTGTCTTCTTCTGGAGAAATATCGACGTGATATTGATACAGGCCCCATTT
GGGAGTTGTTTCAACAGTAAAATAGTTGGCAAGCAGATCCAGGGGAGTACCCGAAGTACC
TTTCTTAGATGTTACAGCTTCTGGACGTGTGCGCAAGATGGAAATAGTTTCAGGAAGGAC
TCTTCCACCCCCTCGTCGAGAGCCACGGCCAACTACGGATGATGCATCACCACCTCCAGA
TGAATGGGGTCCCAGTTCTAATTTTTGCATGCGTTGTTGCACATCGATATCTCCTGGATG
TTCATGTGTAGTGGGAGTAACACGGTGTGAGGCGCGACCCGCTTGTGCTGTTGGTGTCGG
GACACCAGCTCTTACTGGAGGAACACTGGATTGTGGTCCCCAGCCAGATGGAGGTTGAGG
TCTAGGACCAGGTGGCATAGATTGTTGTGATGGGCCTGCTTGTTCCCCTGGACGTCGTGG
TGCTGGTCCGCCTCCATCACCACCACGACCAGCGCGTCCTCGAGCTCGTCCTCTACCTCT
CGGTTCTGACATCCTAAGTTGGTCTCTCTAACAATTTTAATTTTCTCTGCGTTTCGTATA
GATATTCAGGGCTTGTTTTTAACTAAATGTACCACGACCATAAAGATGGCG
(3471 bp)

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