SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14101_c0_seq3
Scaffold_idBomo_Chr14
NCBI non-redundant
(nr)		PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1-like_[Bombyx_mori]
Ontology
GO:0000151 C ubiquitin ligase complex
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
Transcript
Level		FPKM:5.44 TPM:5.47
ORF EntryO_BomoSK18267_5prime_partial:A_BomoSK_comp14101_c0_seq3
Sequence
(Nucleotide)
TTCCTTAAGTATATCTGTTTCTTTGAGTGTTGGACATTTTTTGTTTTTATTTCTCGTGAA
AAAGAAAAATGGTATTCGATCATTTTAATATAGATTTTGTGATTTCGTATTAAATATTCA
ATAGTTTGTTGTATTTATCATTAATCTGTGAACAAGAATGTTTTTATAGAGATCATTGCA
GTTCGATGTGCTGTGATGAAATGTCAAAATTTTCGTGGATTAGTGCCAGAGAAAATTCGA
TTTCATGAAAAATTGTGAATTAGACATAATCACGGATTACGACAAATTACTAATTTTTTT
CTAGTGTTTTAATTCTATTTACCTAATAGTGCAACATTTATGTTTGATGATTGTGCACAT
TTCACACTGAAGGGTCCATAACGACTGGTGAGAAGTGGAGATGAGTACTCCACCGCCAGT
GCAGCTGGAGGTCGAGGTTGGTGATGGCTCAATGGATGACGAGACCCCCGACATGATACC
CGCCGACAGGTACACGTTGCCGGCTCGCGCTGATGCTGTAGTGGAACTATGGCGGAAGAA
TCTGCAGGAGGGTGTACTGGCGCCCTCGCACTTTCAAGATCATTGGCGCGTCACCGTTCC
GAGAATATATTCGCCACAACCCAACAGAACATGTTTGGACTGGTCTTTCGACGAGGAACT
AGCTGCCAAATTGCTCATCCAACCCCTAGAACAGTTCATATGGGGTACAACAGAAGGATC
TCAACCGGGTCCCCCTCGTCGCTCTACACTCTGCGGACGGGTGTTCAAACAAGGCGAACC
TGCATATAGTTGCAGAGAATGTGGCATGGATAACACTTGCGTACTCTGCGTGGAGTGCTT
CAAGGTATCAGCTCATAGACACCACAAGTACAAGATGGGGCAGTCCGGTGGCGGCGGCTG
CTGTGACTGCGGTGACGCCGAGGCCTGGAAACGGGATCCATTCTGTGATTTGCATGCTGC
TCCAAGCGATCAACCGCCCGAGGCAGGCATAAGCGAGGATGTTATAAGAAGAATGAAGAT
CGTAGCATCAGCTTGTTTGACTTATTGTCTAAGGCTGCTTACACACGATCACGCTCCATG
CTTGCCGAACGATCTCAGATTGAAAGACACGGAGCGCGACATCCTGCAGATACTGGACCA
GCCGGATTGTTACTGCACGGTGCTCTACAACGACGAAACTCACACCTTCGAGCAGGTGAT
AACAACGTTGATACGCGTGACGAAGTGCAACCACCGCGACTCCGTGGAGCTGGTGAGCCT
CATCGACCGCGAGGGTCGGGCGCTCATCAAGTGCAACTCGTTCCAGGTCTGCGACAAACT
CAAAACGGACATCGAGATGTTCACGGCGCGCCAGAGCTCCACGCTGAAGGTGCTGGTCAT
GCACGCGCACGTCATCGCGCACCAGACCTTCGCCATGAAGCTGCTCACCTGGCTTCAGAA
CTTCGTAAGCCAAGAGCAGAGTCTGCGCATGGCCGTGTCCCACGTGGCGCTGGGCGAGGA
CATGTGGGGCTCGAGCACGGCGGTGGGGGGCGGCGGGGTGGCCGTCGGCGTCATGCAGAA
CGACTTCCGCATGTGGAAGGCCGCCAGGACCGCCTGGCATCGGCTGCTCATCGCCACCAC
GCTCATGGACTATTCTACGAAGAGAACCATGGCTATATTATTCACCAAAAATTATGGCTC
AATACTGAAGGACTTCATACGAGACGACCACGACCACTCGTTCTCGATATCGTCGCTGTC
GGTGCAGCTGTACACGACGCCGACGCTGGCGCACCTGCTCATCGCGAAGCACGACGCGCT
CTTCGTCGTGCTCAACACTTTTGTGAGCGAGTGTAACCGACGCTGCAATAATGGTCGTCT
AGAGTTCGATCGCAACCACGTGTCGGTGGCGTACAAGCGCGCCCAGTTCGTGCTGTTCGA
CGTGAAGTACCTGCTGGGCTCCGTGCCGGCGAGCTTCGACGACGACCTGCGGAAGGGTTT
CCTGCACGGGCTCTCGTTGCTGCTCAACCTGTTCGTCATGATGCAAGGGATGGACTCGGT
TGTTAGACAGGTGGGTCAGCACATGGAATACGAGCCGGAGTGGGAGTCCGCGTTCAACTT
GCACGTGAAGCTGGCGCAGTCCATCACCATGTCGCTGGAGTGGTGCGCGGCCGAGCGGCC
CCTCACCGCCTCCGCCTACCGCATGGCGCTGCGCCGCCACGCCGC
(2205 bp)

- SilkBase 1999-2023 -