SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14035_c0_seq3
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		U2_small_nuclear_ribonucleoprotein_auxiliary_factor_2_isoform_2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030628 F pre-mRNA 3'-splice site binding
GO:0046833 P positive regulation of RNA export from nucleus
GO:0046982 F protein heterodimerization activity
GO:0051168 P nuclear export
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
Transcript
Level		FPKM:3.69 TPM:3.72
ORF EntryO_BomoSK17569_complete:A_BomoSK_comp14035_c0_seq3
Sequence
(Nucleotide)
CTCTACTTTAATCCAAAAACCATGTGTAGCTTTAAAAAACTCCAAACTTGATTTTGATCA
TGATGTGATTAAATTATGGTTTCTTGAATGCTTAATTTCAACTATAAATTTTAATAGATA
AAACAAGGAACTTACTTGGTCCTCATTTAGATAATTAGGCAATCCCCCTATAAAGATCTT
GTGTGGGGAATCAGGTACAACAGTGCTAATAACACCAGCAGGCACATTTATTGCTGGGTT
TTCAGTGCCTGGCATAGGCTGGTAGTCATGTGGACGTCGAATCTTTAAGCTTTGCCCTTT
AAAATTAATACCGTCAAAAGCCATTGCCTGTGTCGTTTCATCAATTGATCTGAATTCAAG
GAATGCAAAATTTTTATCTAAATTAATCTGGCAAGCCAAAACAGGGTTGCCGGCGGCCTG
GGCCAGGCCCGATAGATGCATTTGTTGATTGAAAAACTCCATTGTTTCTTCTTCGGTGAC
GCCAAAGGGTATGTTGCCGACATATAACCTTCGCGCTTGACGTGTTATAGTCGAACCCAC
CACCGGCACGGCAGCTTGTGGTGTGTCGGCGACAATATTGGCAGGAATCTGACCCGCCGC
TTGCATCGCCTTGTATTGTAATGGCGTGATATGCTCGAATCCCGGCGGCGGTACATCCCA
GTAAAGCGAAGGCTTACGTCTACGTGAACGTTTATTGGGCGATCTTGATCTGCTTTTTCT
TTTTTCTCTTCGTTCTCTAGATCGAGATCTAGAACGTTTTCTTTCTCGGGATCGAGACCT
TCGTCGGCGGTCTTTATCTTCCCCCATCTTATTTACGGAAATATGTAATACAGTAACTAT
TTCTTGAGATAGTAATAAAGGCGCTTCAGCGTTATTAGTATAATTAGCGTTGGCATCAAC
ATAAAATCTAAGTCAGTTTCCGTGAAATGGCG
(932 bp)

- SilkBase 1999-2023 -