SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp14015_c0_seq3
Scaffold_idBomo_Chr9
NCBI non-redundant
(nr)		A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1_precursor_[Bombyx_mori]
Ontology
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0030199 P collagen fibril organization
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0046872 F metal ion binding
Transcript
Level		FPKM:1.42 TPM:1.43
ORF EntryO_BomoSK17361_5prime_partial:A_BomoSK_comp14015_c0_seq3
Sequence
(Nucleotide)
GACGCACGCCGCGCAAAGCACTTGCAGTCGATCAGTCGTGGAGTCGTTTACCTTCCGAGC
GACGAGACGGCCGCCATGTGCGTAGATGCGTGAGCGCAGCGCGCCGCACCGCGACCCACA
GAGAGGCGCAGCTCGCGGCGACGCACGGACCATGCCGTGCTGCCTCTGGGCCGCGCTGTC
TCTGCTCCTCGCGGTCGTCGGCGCCGGCGCCTGGACACCGCCGAGACAGCCCTTGCTGCT
CACTCCGAGACATCGCAGACACGCGCAAGAAACTCATCACTTGCGACTCCTCGGTTGGGA
TCTCAAGTTAAAAGAAAACAAAGCTATTCGTTCGCCTTATTATAAGGAATGTCAGTTTTT
TACGGGACGCGTTCTTCATGAAGAGGGCTCCGCTGTGACGGTTACCGAATGTGACGGACA
GCTGTACGGGCTGCTGCAGGTCGGCGGTGAAGAGTTCGTGCTGCAGCCGACCAGAACGCA
GGAGAAACACGTGTTACGACGCCGAGACGTTACGCACAGCGAGCGTTCGGCCGAGTACAA
CCTCACCGGTGATACGGTCATCGACCTTGATCTTGACTTCGATGAAGATGATGACCTGTT
ACCGACCTCGCACGTACATCCGCGGCACAGCGATCATTCCGACAAAGAGTACTTCCATGA
CATGCATTTGTTCAGAAGACCTGCGTCAGGTGTAAAGGGTCTTTGGCTTGAACTGGCCAT
CGTTGCCGACAACACCATGTTGAAATTTCATGGCCGAGAACGTGTCAAACATTATATTTT
AGCTTTAATGAATATTGTCAGTGCCATCTTCAATGACCCATCACTGGGCTCTAACATCAC
GTTAGTGATCAACAAATTGTTTCTCTACGAGGACAAGGACATAATTTTGAAGTACGGCAA
CATCAAAAAATCGTTAGAAGCTATTAACAAGTGGAACTATAGACATCTCATGAAGCTACC
TGAAGGTAGCACAGGATGGGACGCCACAATATGGTTGACGAGATCCCAGCTTGGAGGGCC
TTCCGGGTTCGCCCCCGTAGGTGGGGTCTGCACCAAAACGCGGTCAGCCGCCATCGACCG
CGACGAAGGATTGACCAGTGCTTTTGTAATTGCACACGAACTCGCTCACTTATTAGGGTT
GACCCACGATGGAGAAGGCAATTGTCAGTCTGAAGCGCTTCGAGGCTCTGTAATGGCACC
GACAGTATTGGCTACCCTACACAACTTTGCCTGGTCAAGTTGTTCAAAGGAACAATTTCA
TGCGAAATCAAAGAAGTGGTGGTGCCTCCATGAGCGTAGCACTGACGAGGGTGTGGAACT
AGGTGGTGCTAAGGAGCTCTCAAATTATGTCTTCACAATGGATGAACAGTGCAGGACTGA
ATTCGGAGAAGGTTTCTCAGTGTGTCGATCCGTAAAGGTTCGGTCTGCGTGCTCAAGGTT
GTGGTGTGCCCACCGCGCTATGCCTCACGTGTGCCGGTCAAAGCGAGCGCCGCCTCTCGA
GGGAACACCCTGTGGACAAAACCAATGGTGCGTGGATCGTGTCTGCGAGCCGATGCCTGG
CCACAGTAAAGAGACTAAGGTTGAAAACAAACATACTCCAGAATGGGGAGATTGGGAGGA
GTGGAGCGCATGCAACGCAGATTGTGGTTACGGCCTCAGGACAAGAACACGAAAATGCAA
ATACAGAGGGTTTGTATCAGAGAGCGCATGTGAGGGTGCTGGATCTCAAGTAGCGACTTG
CTGGGCGGGGTCTTCGTGCGCTGCAACCAGAGACATCCGCTCCGACCTCTGCCATCGCCA
ACAGAGCAGACTCATACCTTATTTACATGCCAACGAGTCCAACCATTGTGAAATTTCGTG
TGTGGACTACGCTGGAGGGTCGCCCACCAATTTCGGAGCCCTACCCGACGGAACGCCCTG
CAGCTACCTTCGACCCTTCGACGTTTGCTTCCAGGGTACGTGCGTGAAAGGTCAATGCAA
TTCATCAGATACAACCTGCAACTGGTGCCCAGACGGCTACTGCAACAACAACACTAACAC
ATACACAAGATTACTCGGTAACGGCTGGACTCGCATGACGATGGTGCCGCACGAAGCACG
TCAACTGTCCATACACATAGCCACACCGATTCCCCTCCACATTGCACTGCGCGAACGGAA
ACGGGACAAGCCGATTCTAGAACTTTCTAAGCACTCCAAAAAATTCGACATCAGCTCCCT
TCAGGACAACTACTTGAAATACGATCCGAGCGTGCCTCAGAATCTTCAGATCGTGGAAAT
GGACAGCAACATTTTAGACTTGAAAGAGAGCTTTCGTTATGAAGGCGAGGCGATCACGGC
TGGGACTCTCCTGCGCTGGAATCAAACCGACACGGACATTTATATAACGTCAGAATCTAG
ACTGCAAACTGATTTGATGATAATGGCAATACCAGTTAATCCTACATTAGAAGATGCGGT
CAGTGTGGACGTGTCAGTAAACTACAGCACTCCAACTGGACGCACGAGACCATTGGAATA
CAGCTGTGAATTTGTGTGGGCTTCTGACGATTGGGAAGAATGCAGTTCGACATGCGGTAG
CAACGGTGTTCAAGAAAGACAATTGTTCTGTGTTCCATCAAACGCAAGCATGTTATCGAG
GAGAGAGTTTATCAAACACAGCGTGTCACCAGTCATGTGCTCGTCGTCAAAGCCGCCACA
TCGCCAGCCCTGCAACCGTATCCCCTGCCCTGTTTACTGGAGGGAGCAACCCTGGACTCC
TTGCTCGGCGTCGTGCGGACGCGGCGTGTCCCGGCGTCCGCTCACGTGTCCGGCGTCAGA
CGAGCTACTATGCGGACCGAAGCCGCGCGAGCGACGCCGGCGCTGCAGACTCCGGCGCTG
CCCCTCAGCATTGAGAGTCGCAGTGCAGTGCCCCGAACGCGACCACGCGCACTACTGCGA
GCTCTTCACACTGGAACAGCTGCACCGGAACTGCGAGGTGCCGCCGTTCAGGAAATATTG
CTGTAACGCTTGCAGGGACGCAGACCGCCGTCAGCACAGACGGTACGGCTGAGAAGCGTC
GCTTCTGTCCAACTTAATGGTAGAAACTGCGTTTTTATCAAACTTCTGGGACTACGCTGA
ACCGAGAAACCGAACCGGTTATAATGTAGGTTCGTAAACTTCGTAATATGCTAGAATGTT
TTTAAAAGATTTTACGATGCAACCTATCTTCTTAAGGTCCACATTATTGAATAAATTATA
ATAAACATAACTCTAAAACTGTACATTATGCAAAATTTATTCGTACACAAACATGATGTC
ATAGTATTCTTATATCTTTTAAAGGTCATAGTCAATATACTGAGGCCCATAGTTTCAAAG
CGTTATTTCTATCCTCTTCTTAAGGTAGCGTTTGGAACTAAACGATTACTTAAAAAAATA
GTATGGTTTATTTTGATAACCACAACTGTGTATTACTACTACAATTTTTCAAATAATAAT
TAACCAACTGGATTTTATTGTTCATTTTTGATAAAAAAAAACTTATTCGAGTATTTTCAA
ACGTTGCCTTAAACAATGGTCTCTTGTTATTTAGTTAAAAATAAAAGATTCCATGTCAGC
ATAACCGGTATTTTGTACGTCTGTTGTTTTTCGTATTTATAAGTAGATTTTAAGAAGTAA
TTTTATATCGAACATGAAGTACGGAACAAAGTGCCATAATTATGTACTACAAATTCACCA
TAATAAAAG
(3729 bp)

- SilkBase 1999-2023 -