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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13847_c0_seq2
Scaffold_idBomo_Chr18
NCBI non-redundant
(nr)		PREDICTED:_speckle_targeted_PIP5K1A-regulated_poly(A)_polymerase-like_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016180 P snRNA processing
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0050265 F RNA uridylyltransferase activity
GO:0071044 P histone mRNA catabolic process
GO:0098789 P pre-mRNA cleavage required for polyadenylation
Transcript
Level		FPKM:9.40 TPM:9.46
ORF EntryO_BomoSK16283_complete:A_BomoSK_comp13847_c0_seq2
Sequence
(Nucleotide)
CCAAGGCAACCGGCTGCATCCTTTGTTAATTGTTTCTGGTTTAATTTTGGCATATTCATC
TATTTAGCAAAATAAATGTCCAAGTGTGTTTCTTACGTTTACAATAATACATTACTATCA
AACCAAACACTTTTTTTTTAAAAAGTTGGATACCATCAGTTACATATTTTTGGAATTTAA
TTACAGCGTGTTCAATATCGCTTAGCTGTTTATGAGTCTTAATTTACAGGTGCAAAAAAG
ACGTACAGCTAAGCAAATCTTTATCTTGGCTTCTGAGGCACAGTGCTGTGAAAGAAGGAC
TGCAAATAAGGACTTCACCTCTATCCATGAACCATGGAGACAAAGGTAACAACGCCGGCG
GATGAAACCCCCACGACCGCCGCCCCCCCACAACCCACACCACCCACACCACAATCGGCA
CAGACCGCACCAAAATCCGCTTCGAAAACTGCACCACAAGATGTAACGAAACAACCGTCA
GAAGTTTCACCACAACCTGCACCGAAGCAACCTTCCAAGGCTGCGCCACAACCCGCATCG
AAGCAGTCTTCGAAAGCTACCCCGCAATGTACACCGAAACAAGCCCCGCCGAAGCCCGCC
CCCCGGCAGCCAGCCCCGCAACCTGCGCCCCGAAGGAAGAACGGCGCGTCCCCAGCGCCT
ACAACTTCGCAACCAAAACCCGACACACAGAGCACAACTAAAGAGAAGGCAACCAAAATG
ATTATTGTGACAGGTTTTCCTCCATATGTCCAGCCCGTGGACTTAATAAGAACTTTCAAT
GTATTTGGATCAGTCCAAATCAATAAGCTGAACCCAAGATTCTCTACGATCACATTCTCA
TCAGAAGAGGAAGCTGCGGAGGCCGTCAAATGTAACAATGAACTGAACATCTACGGAGAG
TTTCTAACAATCAAATTGTACTACGGACGGCCTTGTGAGGAACCCAAACACAGTCCCAAG
AGAGAATTTGCAAGGACCAAAGAGAAATCCATAACCATAGATCCGAAGAAGATTGACATG
TCTGGTGATTTTCACTCTCAACTCGACAACATTCTGGCTGCTGTGAGACTGACCCAAGAG
GACGTGACCGCCCTCACTCAACTCTATACAGACGTTGAATACGCTCTGCAGTCAATATGG
CCTGGTTGCAAAACAGTGCCCTTTGGTTCTATAACCACGGGGCTGGGAGTTAAAACGAGC
GACGCAGACTGTTTCGTGGATGTGCCGCCGCCCTTCAGACACCCCCAGGCCAACTTCGTC
GTCAAGGCCAAGAAGATCCTTCAGCACTATCCGGGAACGTTCTCTGAGATACTGTGCATA
CCTCGGGCCAACACCCCCATCGTCAAGTTCTTCCACATCCCCACCGAAACCAACTGCGAT
CTGACCTTCAAGACTCCGTTGGGAGCACACAACAGCAAGCTGATCGCGTTCCTCCTGCAC
GCGGACCCCAGGCTCATCCCGATGGCCGTGGTCATCAAGTACTGGGCTAAAGTGCACGAC
TTCTCTGGAACCGGGAAACTGACGAACTACGCTCTGACGATGATGATCATATTTTATCTG
CAGCAGCCGCCCATCTCGATCCTGCCGGCGGTGGCGTGGCTGCAGAGTGACGCTTCCACA
CACTTCCTCGTAGACTCCTGGAATGTGGGCTTCATGGGCCAGAGACAGCTGCTGCCACCC
TCCTCCAACACTTCCTCCATATCGGAGCTCCTAGGAGGCTTCTTCGAGTATTATTCCTCG
TTCAACTTTGACGAGATGGTCGTGTGTCCATACTTAGGTGCGCCGATAAAAAAAGCGTTA
TTTAGAGACACATTTTTGCTGCCCAAAGAGTTTGATCGGTACAAGATGAATGTGTTGGAG
AATATGGTGCTGCCCATGCGCCACGGCTCCGCCATCTGCGTGCAGGACCCCTTCGAGCAG
TCGCACAACTTAGCGTCCGCCATCACCTCCAGGCTCGCCTCCGACATCAAAGCTTACTTC
AAGCACGCGGCGAACGCTTACGAAAAGGAAAAGTTGAATCGTAATTTGGAGTTCCTAAAG
ATCATACTGCTCCAAGCACCCAATCTGCTGCGTCCTAAAACCCATCAAGAGTACCGAGTG
AACATATTCCGCAGGATTATTGCGGCGATAGTGGATCCGGATTGGAAATCCGTAGTCAGA
GAAATCGTGTTTAGGATATTCGAGAAACTGCTGAAGATTACATTAGGGAAGTGTGAGGAA
ACAATGAAGCCGGACAGTAAAAAACAGAAGGAAAAGTACTCCGGACAAGTGACGAAGGCA
ATATGGAAGCGAAAAAAATTCACCAGATTATACAGCGCCACCAACCTGGACTTCGAGAGC
CAACAGAAGAAGATAACCGAGGAGATCATGCTGGTCGAGAAGCAGGCTATCGAAATGAAC
TTCTACTTGATTCTAACATTTTCTGACAATCCCACCAGCGCCGTCATCTCGCTGCGGAAC
GCTTCGCCCGGACAAATAGAGAACTTTAGAGAATTTGGAAAGTTTTTCATTTCGAGCATG
CAGCAGTGGTTCCTAGAACTAGTGAAACCCTATTCCACGCCCATAAATGAAAACGTAGCG
GACACGATAAAAATGATAGACAAGAACGCCGAGGAGCCGGATACGTCTGACAGTGACGCG
GAAAATTTGCCGCAAAACCAATCTGAGGAATGTAACGAGAATGACATTATAGTGACGGAC
AAAATGGCCACTAAAGAAGCCGGCAACCTCAGCGAAGAATGTACTACGCATTAATCTAAC
GAATCGTGCATTTTAAAATCATGAAAATTAAAGTACTTATGACGCGACTTCTTAGTTTAT
AATAATTTACATATAGTACAATTTTTCTCATATTTTTTTAGTTCTAGTGAACTAATTTAT
ATATTATTTTAAGCTAAGACGTTTTACGATTTTTTATTTTTTATTTTTACGCTG
(2934 bp)

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