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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13847_c0_seq1
Scaffold_idBomo_Chr18
NCBI non-redundant
(nr)		PREDICTED:_speckle_targeted_PIP5K1A-regulated_poly(A)_polymerase-like_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016180 P snRNA processing
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0050265 F RNA uridylyltransferase activity
GO:0071044 P histone mRNA catabolic process
GO:0098789 P pre-mRNA cleavage required for polyadenylation
Transcript
Level		FPKM:4.65 TPM:4.67
ORF EntryO_BomoSK16280_5prime_partial:A_BomoSK_comp13847_c0_seq1
Sequence
(Nucleotide)
ATTTTATTTCTTTGAATTTTTAAAACCAAATATTCTTAAAATTTCAGGTTTTCCTCCATA
TGTCCAGCCCGTGGACTTAATAAGAACTTTCAATGTATTTGGATCAGTCCAAATCAATAA
GCTGAACCCAAGATTCTCTACGATCACATTCTCATCAGAAGAGGAAGCTGCGGAGGCCGT
CAAATGTAACAATGAACTGAACATCTACGGAGAGTTTCTAACAATCAAATTGTACTACGG
ACGGCCTTGTGAGGAACCCAAACACAGTCCCAAGAGAGAATTTGCAAGGACCAAAGAGAA
ATCCATAACCATAGATCCGAAGAAGATTGACATGTCTGGTGATTTTCACTCTCAACTCGA
CAACATTCTGGCTGCTGTGAGACTGACCCAAGAGGACGTGACCGCCCTCACTCAACTCTA
TACAGACGTTGAATACGCTCTGCAGTCAATATGGCCTGGTTGCAAAACAGTGCCCTTTGG
TTCTATAACCACGGGGCTGGGAGTTAAAACGAGCGACGCAGACTGTTTCGTGGATGTGCC
GCCGCCCTTCAGACACCCCCAGGCCAACTTCGTCGTCAAGGCCAAGAAGATCCTTCAGCA
CTATCCGGGAACGTTCTCTGAGATACTGTGCATACCTCGGGCCAACACCCCCATCGTCAA
GTTCTTCCACATCCCCACCGAAACCAACTGCGATCTGACCTTCAAGACTCCGTTGGGAGC
ACACAACAGCAAGCTGATCGCGTTCCTCCTGCACGCGGACCCCAGGCTCATCCCGATGGC
CGTGGTCATCAAGTACTGGGCTAAAGTGCACGACTTCTCTGGAACCGGGAAACTGACGAA
CTACGCTCTGACGATGATGATCATATTTTATCTGCAGCAGCCGCCCATCTCGATCCTGCC
GGCGGTGGCGTGGCTGCAGAGTGACGCTTCCACACACTTCCTCGTAGACTCCTGGAATGT
GGGCTTCATGGGCCAGAGACAGCTGCTGCCACCCTCCTCCAACACTTCCTCCATATCGGA
GCTCCTAGGAGGCTTCTTCGAGTATTATTCCTCGTTCAACTTTGACGAGATGGTCGTGTG
TCCATACTTAGGTGCGCCGATAAAAAAAGCGTTATTTAGAGACACATTTTTGCTGCCCAA
AGAGTTTGATCGGTACAAGATGAATGTGTTGGAGAATATGGTGCTGCCCATGCGCCACGG
CTCCGCCATCTGCGTGCAGGACCCCTTCGAGCAGTCGCACAACTTAGCGTCCGCCATCAC
CTCCAGGCTCGCCTCCGACATCAAAGCTTACTTCAAGCACGCGGCGAACGCTTACGAAAA
GGAAAAGTTGAATCGTAATTTGGAGTTCCTAAAGATCATACTGCTCCAAGCACCCAATCT
GCTGCGTCCTAAAACCCATCAAGAGTACCGAGTGAACATATTCCGCAGGATTATTGCGGC
GATAGTGGATCCGGATTGGAAATCCGTAGTCAGAGAAATCGTGTTTAGGATATTCGAGAA
ACTGCTGAAGATTACATTAGGGAAGTGTGAGGAAACAATGAAGCCGGACAGTAAAAAACA
GAAGGAAAAGTACTCCGGACAAGTGACGAAGGCAATATGGAAGCGAAAAAAATTCACCAG
ATTATACAGCGCCACCAACCTGGACTTCGAGAGCCAACAGAAGAAGATAACCGAGGAGAT
CATGCTGGTCGAGAAGCAGGCTATCGAAATGAACTTCTACTTGATTCTAACATTTTCTGA
CAATCCCACCAGCGCCGTCATCTCGCTGCGGAACGCTTCGCCCGGACAAATAGAGAACTT
TAGAGAATTTGGAAAGTTTTTCATTTCGAGCATGCAGCAGTGGTTCCTAGAACTAGTGAA
ACCCTATTCCACGCCCATAAATGAAAACGTAGCGGACACGATAAAAATGATAGACAAGAA
CGCCGAGGAGCCGGATACGTCTGACAGTGACGCGGAAAATTTGCCGCAAAACCAATCTGA
GGAATGTAACGAGAATGACATTATAGTGACGGACAAAATGGCCACTAAAGAAGCCGGCAA
CCTCAGCGAAGAATGTACTACGCATTAATCTAACGAATCGTGCATTTTAAAATCATGAAA
ATTAAAGTACTTATGACGCGACTTCTTAGTTTATAATAATTTACATATAGTACAATTTTT
CTCATATTTTTTTAGTTCTAGTGAACTAATTTATATATTATTTTAAGCTAAGACGTTTTA
CGATTTTTTATTTTTTATTTTTACGCTG
(2248 bp)

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