SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13803_c0_seq5
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_ATP-dependent_RNA_helicase_dbp2-like_isoform_X2_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009791 P post-embryonic development
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030331 F estrogen receptor binding
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0072358 P circulatory system development
GO:2001014 P regulation of skeletal muscle cell differentiation
Transcript
Level		FPKM:2.48 TPM:2.50
ORF EntryO_BomoSK16067_complete:A_BomoSK_comp13803_c0_seq5
Sequence
(Nucleotide)
CCGGGGACTTGTCAAAAAAAACCGAGAACTAACATGGCGCTCGTTTGGCTTTGGCATCAG
TTGTGCTATGTCTGCGACTGTGTTTATCAATAATTGCTTAATTTAAACGTAATATAATTG
CAACCAAAGTACCTACTCTAAATAGTAAATTGAGAGTGGTAGTTAAACTACTTCATATAA
GCTAGCATCATGTATGACGATAGACGTGGTGGCCGTGGTGGAAGAGGTGGGAGTCGCGGA
GGGCGAGGATCCAGCCGCGGTGGTCGGGGTAGCGACAGGTCGCAAGAGCGCGGACCTAGT
CGATTTAGCGGAGGTCGTGGTCGGGACGGTGGACGCGGCGGTAGGGATGGCGGCCGTGGA
GGACGAGACAGCGGCAGGGGTTTTGGGAGAATGGGGAATCGGGATGATCGCTCCAATTTC
AAAAATGATCAGCCTGGCGGTAACCTTCGAAAAATTCACTGGGACACCGTAACGCTCACA
CCATTCCAGAAAAATTTCTATGTCCCTCATCCGAATGTTCAACGTCGAACTCAAAGCGAA
ATTGAGGCCTATCGTAGCCAACATCAGATAACTGTGAAAGGTCGAGACGTGCCTGCCCCT
AGCATATTTTTTGAAGAGGGTGGTTTCCCTGACTATGCTATGAAAGAGATTTTAAAACAA
GGTTTCCCGAACCCCACTCCTATTCAAGCACAGGGCTGGCCAATAGCTCTCTCTGGCCGT
GACATGGTGGGCATAGCCCAAACTGGGTCAGGCAAAACCTTGGCATACATTTTACCAGCC
ATAGTACACATAATTAATCAACCGCGTCTGCTAAGAGATGATGGTCCAATAGTCCTTGTG
TTGGCTCCAACAAGAGAGTTAGCCCAACAAATACAGCAGGTTGCCAATGAATTTGGTCAA
AGTATCCACGTGCGGAACACTTGTATCTTTGGTGGTGCTCCAAAGGGACCACAGGGCAGA
TGTCTTGAGAGGGGAGTGGAAATTGTTATTGCTACTCCTGGTAGACTCATTGATTTTTTG
GAGAAGGAGACAACGAACCTGCGCCGATGCACTTATTTGGTGCTGGATGAGGCTGATAGA
ATGTTGGACATGGGCTTCGAGCCTCAGATCAGGAAGATTATTGAACAGATTAGACCTGAT
AGACAAGTATTGATGTGGTCAGCTACGTGGCCCCGAGAAGTACAGAATCTAGCTGAAGAG
TTCCTGCATGACTACATCCAGATCAACATTGGTTCTCTCGAGCTCTCGGCCAACCACAAC
ATCCTCCAGATTGTTGATGTTTGTGAGGAATGGGAGAAGAATGATAAATTGATTACATTG
CTTACTGAGATATCTTCAGAGGAGGAAACCAAAACTATTATATTTGCTGAAACCAAAAGG
AGGGTTGACGACATATGTAAGGCGATAAACCGTGCCGGCTGGCGCGCCCTCGCCATCCAC
GGGGACAAGAACCAGCAGGACCGCGACTACGTGCTGAATCAGTTCCGCCACCACGCCGCC
GCCATACTGGTCGCCACCGACGTCGCAGCCAGGGGACTCGAGGCGCATGCGTGCAGGCAT
AAAGGCTAGACTAGGTGTGTGTTGCTGACTTCACCATTCAAATAATATACATTCTATATT
CACGATGTAATCGTTGTGACGACAGCGCACACTGTACGAATGAGCATGCTGCCTCTATTT
CACAATAAGGGTCTCAGTTTCGGGGGTAGTTTTGAACACAAAAATGTGAATGTGAATAAA
TGAAAGCAAAATGAGCAATATATGCTTGGTTAATTGTCATGAGAGATTTTCGTAACGAAA
TAAAGGGCCTACCCTACGCAACCTGACAGCGTGACACTTGTTATCACCTCATGGAACATT
GAGTGTGAGGGTAATGTAAAGTCAGCACACCGACTCTTGGCCTACAACACTCCGGGACCA
CTGACGGGCATAATACAGTTAATTCCAGCAGGTCAACGCCGACTCTGAGCTGCCACAGGT
AAATATTACTTTGGCTCTCATGGTTTGAGGTGAGTGTTTGGTTCATTGAATTGAGGATTA
GGATTAGACGTTCAGTGAAATTAATTATATTAAAGTGATTATTTTCAGTTCAAATCAATT
GGAGGTTTCATCCATAATTTAGATAGTAAATGAAATTCCATATAAACTCTTGTTCAAATA
AAATCATGATATTCTAATTTTTTTATGTTTCCTTATATTCATTGACCGAACGTTTTCCTC
AAACTTGC
(2228 bp)

- SilkBase 1999-2023 -