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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13690_c0_seq3
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		PREDICTED:_Niemann-Pick_C1_protein_[Bombyx_mori]
Ontology
GO:0005319 F lipid transporter activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0006897 P endocytosis
GO:0006914 P autophagy
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0007628 P adult walking behavior
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016242 P negative regulation of macroautophagy
GO:0030301 P cholesterol transport
GO:0031579 P membrane raft organization
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0033344 P cholesterol efflux
GO:0042493 P response to xenobiotic stimulus
GO:0042632 P cholesterol homeostasis
GO:0045121 C membrane raft
GO:0046686 P response to cadmium ion
GO:0046718 P viral entry into host cell
GO:0048471 C perinuclear region of cytoplasm
GO:0060548 P negative regulation of cell death
GO:0070062 C extracellular exosome
GO:0071383 P cellular response to steroid hormone stimulus
GO:0071404 P cellular response to low-density lipoprotein particle stimulus
GO:0090150 P establishment of protein localization to membrane
GO:2000189 P cholesterol homeostasis
Transcript
Level		FPKM:7.51 TPM:7.56
ORF EntryO_BomoSK15379_complete:A_BomoSK_comp13690_c0_seq3
Sequence
(Nucleotide)
TTTTTTTTTTTACATAAAAAGCCCAATTTATTTAAACCTATGACAAAATTAAGTGTCGGT
CGGTACATTTAAGCCATAACCTTTGGACCAATACATTCTCTAAATTAAGTACTACGATTA
AGTAGGAGATTCCTGTTTTGTAAACTTGATATTACAAACAAAACTGTTCTTTATAATTTT
TATGTAAAACATGACATTAGGAACGCGTGAAGTTAACAAACTATAGTATATAATATAAAA
AAAATCTCTTCTCATTAATCACATAATATTATAATACAGATCATGTAAATAATACATAAA
ATAAAAACACATTTCTCAATTTCGGTGACGTTTTACAGATGTACTCGTGTGAGCGAACTT
TCGGCGACCGTCGTCTCGTTGCCGCGCCGCCTCTGGTTGGCCAGCTTCTGTTTGTTAACC
GGCGAACCGATATAGCTGAGCATAACCGGCAGGAATACGAGTCCGTGGGCCGCACCGAAC
AGCACAATCCCGAGGTACATCCGGAAGTAGAACACCTGGAAGATCTGGCTCTTGGCCGTG
GCGAGCACGATGATGCCGCCGAACTTGGTGAGCGTGATGCCGGACAGCACGGACGAGCCC
ATGCGCAGCAGCGCGTCCGCCGCGCGCTCCCCGCGCCCGCGCCCCGCCGACACGCTGAAC
GAGTGCACCAGGTGCGAGCAGAACTCCACCGATATGCCCACCGCCATCACCAAATTTACA
AGCGAGACTGCATTCAAACTGATGCCCCACCAGTACATGAGGCCGCCGAGATTAACAACA
ATCATAGTGATGGTCACTACGACTACAAGAGCCGAGAAGAGATCGAAGCCCATGAGCACG
AAGGTGACGAAGAATATGGAGAGCACGGAGATGCCCATGCTCTTGAGGGTGTCGGACCAC
ATGGTGAGGTACTGCTCGTAGAAGACGTAGAAGACCGAGTAGGGGAAGACGTTGACGGTG
GCGGAGTGTCCCAGGTCGCGGAGGTGCGCGTTGAGCGTCTCCGTGAGCGAGCCCGCCAGC
GCGCGCGCCGCCCGCAGGCTGCCGTAGTAGTCCGAGCTGCTGCGCAGGACCGTGTGGTAG
CTCTGGTAGTAGGTGGCGCCGATCCCGGTGGTGTTCTGGCTGTGCGAGCGCAGGTTGACG
GCGTGCGAGTAGGCCGCGTGGCCTCCCTTGACGCAGCGGCTCGACGGGTTGTCCTGCAGG
AAGTACGGCAGGTACGTGCTGAAGTCCTGCGGGCTGGGACGCTCTTCCGGCTGCACCAAC
TTTATGTTGCAAGCGGCACAATCGTCGGGTTGAGTGTCGCTGGGACAGAAGCTGTTGTTG
GACTGGAAGTAGAAGCAGCACTCCGGTGAGACAGACCAGTCGAAGAAGTCGTCGAGCCAA
GAGTTGGCTGGAGCCGCGATGTACGTGTCGGCCGGGCTGCGGGACGCAGCGTATATCTGC
ATGGCGAGACTGTCGGGTCTACAGAACCTCGAGCCGCACAGCAAGTTCTGCACGTCGGGG
GTGGAGTAGTTCAGCTTGGCGTCCGTCTCGGCGTCCGTGAGCACAAAGTAGACCGGCGGA
CCGATGTTCAGGTAGCGGTTCAGATGCTGGAAGTACTTCAACTGGAAACTGTCGTGGGGC
ATAGACAGCTCTTGGTCTAGTCCGATGTCGATGTGAGGCGCTACAGCAACAGACGAGCAG
AGCCAAGCAAAGAATATAATCATGACTGAGGCTCTGACTTCCCTCTTCATCAGGAAAGGT
ACATAGAAATGTTGAAACAGGTTGTACAATGCTCCTTCACCTTGTTCTGCCAGGTCTGTT
TTGGTGCCCCGCAGACAGCAGAATATATCGAACCTGTTGTCGAGTTGTCGGCGCGTGTCC
AGCGCCAGCAGCGCCACGAAGCAGGTGACCTGCAGCAGGAAGTCCACGAGCAGCGCCACG
GCGGCGTACAGCGCGAAGGCGCGCACGGCCGGCATGTCGCTCAGCGCCCCCAGGAAGAAG
CACACCGACTCCGACACCGACGTCACGAACATCGACGGGCCCACCTTGCCGAGCATTCTA
CCGATGTGTTGCTCGACGGTCTCGTCGGGGCGGCGCGGCTCGCGCTGGTGGGTCTGCACC
AGGATGAAGATGTTGTCGACGCCGACGGCCAGCACCAGGAACGGGATGACCTCCACGATG
ATAAGCGTGGCCGCCACTCCATAGAACCCGAAGATGCCCATGGAGCACACCACAGACGCC
AACACGATAACCACACCGCCGAGCCCGAGCGTGATCTTGCTGTCGATGAGCAGCCGCGAG
AAGGTGGTGAAGCGGCCGAGCGCGATGGCGATGTACGCGAACATGATGAAGTAGGACACG
AGGATGGTGTACACGTCCGACTTGGACTCGCGGTCCAGCTCGTCCTCGATGGAGCGCTCC
GACGTGTACGCGATGTCCATGTAGCCCGGCATCGCCTTCTCCGTGTAGTTCTTCATGAAC
GCAATGAACGTCTTCTCCCACTCCAGTGCTTGTTTCAGCTGGGACTTGTCCTGCTTGTTG
TTGACGAGAAAGGTGAGGATGAGTGCCTGCGCGCGGTGGTAGGGCGCGTGGGCAGAGAGC
TGGTCGCCGCGCGGCAGGAAGCCGCCCAGCGCCACGCCGGGCAGGACGGGCCCGCCGTAC
GACGACAGGCAGTCCACCGAGATCGGGTTGCTGGAGCACTGCAGGATCTTGTCCAGGTGT
TCGTTGTCCTCGTAGGAGAACTCGGACTTGTCGTTCTGCCACCAGCCCCACACGCTCTGC
AGCACGCAGTCCTTGCTGGTGACGGGGCCGCGGAAGGGCGACGACAGCGGCGCGTAGCAA
ATGTTCTGGATCCCGGACTCGTTGCCGAGCTCTAAGATCTTGGACTGCAGGTCGAACACG
TCCAGCATGAAGGTGGCGTTGAACACAGGCCCGAAAGTCAGGTTCGCGTGTTCGATCTCG
GGCAGACCTTTCGAGCTGATTATTAACATTTCTGTCCTGTAGAAAGGTTCGAAGTAGGAA
TCGAACCGCTGCCTCTCGACCCTGGAGCGCGAGGTGGGCGAGGCCCACAGCTCCACGGGG
TCGGTGGTCACCTGCATGTACGTGATGCCGGAGCCGAGGATCACCACAACGCACAAACCA
GAGAAGAGGACCAGCCAAGGCGAGGAGGCCATGACGCAGCCCCACCACTGGAAGAAGTCT
TCAATTTTGGATTCCGTCGCAGCACCGAGCTTCTCGAGGAACGTCGCGTCTGTCTCGTCG
CCATCGGTGGCCTCCATGGTCCAGCGCGTGCCCGACGCGTTTGTTCCCATCTCTTGATTG
TTGTCTGAAGACACACCGTGCGTATGCAGTAGGGGCGGGTACGTACTGGCGCGGCGCTCG
TGCAGCGGGCTCGTCTCGGGGCCGCACTCAACGAGGTTTTCGGTTTGATTGCAACAGAAG
ACGCCCGTGAGGAACAGCGTCGAGAAGATACAGAATACGATGGTCATGACGATTGCGTAG
CCGTCGAAGCCCGCGATGGAGAACGGCTGCGGGGGCGGGGGGCGCGGCGGGGGCGCGCGG
AGCCGGTCCCACTGCGAGCAGAT
(3563 bp)

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