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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13690_c0_seq1
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		PREDICTED:_Niemann-Pick_C1_protein_[Bombyx_mori]
Ontology
GO:0005319 F lipid transporter activity
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030301 P cholesterol transport
GO:0031902 C late endosome membrane
GO:0042632 P cholesterol homeostasis
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:7.78 TPM:7.83
ORF EntryO_BomoSK15370_5prime_partial:A_BomoSK_comp13690_c0_seq1
Sequence
(Nucleotide)
TTTTTTTTTTTACATAAAAAGCCCAATTTATTTAAACCTATGACAAAATTAAGTGTCGGT
CGGTACATTTAAGCCATAACCTTTGGACCAATACATTCTCTAAATTAAGTACTACGATTA
AGTAGGAGATTCCTGTTTTGTAAACTTGATATTACAAACAAAACTGTTCTTTATAATTTT
TATGTAAAACATGACATTAGGAACGCGTGAAGTTAACAAACTATAGTATATAATATAAAA
AAAATCTCTTCTCATTAATCACATAATATTATAATACAGATCATGTAAATAATACATAAA
ATAAAAACACATTTCTCAATTTCGGTGACGTTTTACAGATGTACCTGTAAAGACAGACAG
CTCCGTTTTATGTATATATTTTAATTTCATTAAATCAAGGAGCCCTTCAACCAACACCGA
ATTAGTATTTCACCCTTAAACGCTTGCTAATGGAATTTCTAATTCATTTGAATTTGCATT
TAACTTAATACATTTTAATTCAATAATGCTCTGACTATATCGAACCATCTTATTTTTGCA
TAATTTACAAGTCAGAACACAAAGCCATTTAAGGGTCACCAACAACGTTAGTTAGTCTAT
TTTATTTAAAAGTATAAATTAACAGAATGTGCATGATAAATAAGGAGGTAACGTGAAATG
AAAAAATTGACCAAACACCATTTATTGCTTTGTTTTTCATTTTCCAACCCATTACCAAGA
AAAAACATGCTCCAGAGAGAAGATTGTCTTTGTTAAATTTAATTTATTTAGTATTTATGT
AACTGTTTTACATTTACAGTAGAAAACGGTGGTGGATGGTCACCTACGTAAAGCCTACTT
TAATGCATACTGATAAGTCTCAAAATCATTTAGCTTGTAAATCTCAATTTCGTTCACATT
TCTTAATAAATAATATTCAAACTAATTTCATAAATTAAGTGAAAAACAGGTTAAACATAT
ATTATAAATTATTTAATAATTATTAATGTATTAAATTATTAATGTATTAAACTATTAGTG
CAAATAGTTTATATTTTGCACACATATAAATATTCTCCAAAGTGCTACCAACCCTTTGAA
CTCATTAAAAAAAATCTATCAAAGTTCTCATTTTTAATAAGTAGCATTGCAGTGAGCGAC
TTCGTTTTTTATTACTAATAAAACATTTTCTCTGAACGTTCAATAATAATAGTTGCTCCA
AAAGCTTCTAAATAATAATAATTTAATTAGTTAATTCATTTACCATTTTACTATTATATA
ATGTAAAATGTGTATTTCATAATTTAAATTGTAATATATACAAATGAAAATAATTAAAAA
TTTGAGACTTCAGAATTAATATTTGATCATTTGTTTAAAAGTTCCCAACCACGATATTGC
ATCAGACAACCACCAATATTCAATGTCTTAAACATTATTATTTCATAATTTATTTTGAAA
CGTATAAGAACATTACGGCGGAAGCAGATAGCGACACGTCACCAACAAATATCAATAATA
AATTATAATTATTATAGTTGACAGCAAAAAAAAAAAGAAAATAAATAGTAAAATTTCTTC
ATTAAAAAAATAAACGGCATGCATATTAATTATAGAAAAAAAAAAACATTTGTTACTTTA
ATGTAAATACGCAGTTTTATACCATGTACCATAAAACAGGTTAGAAACCAGTTTGTTGGA
AGTGTAATATAAAATAACATATTGTGTTGTTAACTTAACAAAATACAAAGATAAAGGTAA
AAAAATAAAATAAAACCGCTCTCCCTGATAAATATTTTTGTGACCTTCGTTAAGTAAAAC
GGTGTTAATATAATATTAAAATTATTATATATTAATTACTACAAGCAAAACGAAAAGAAA
GACTCAAATGGTTTAATTTTACAAATAATATTATTTTAACATTACAGTGCATAGCTGTAC
ATAAAACGGATCCATCGTTTATTTCTACAAAATGAACATTGAAGCATTTTATATAATATA
TTTAATAACAACTAAATATATCCTGACCTGAACGTTGTTCTCAAAGTCACAAAAATATTT
AACGAAATATAAATTAAAAAACAAAATACGAAAACAAGGCCGTAACAGTAAGTAGCATTT
CAAGTAGCATTTCTCTAAAAATAAAACACTCAGGAATAAAATAATACTGTGTACGTACGG
ATAGAAAAATACTAATTGAAACATTTAATATGCGACTTGTTTTAATATTGTACAGCATAC
ATGGACGCGTTGTTTGCGTGACGAAATTGTATTATACAATGTTTAGCTGAGCATTTTTAT
TTGCAAATATAATTCCCTAGGTTGTTAGGGTACAATCAAATACTCCCGTGTAAACGTTAG
CTAGCACTAAAACATTCGACGTTCGATTTTTTTTTTAATTCATGGATAGCGCGCAATGTA
ACACAAAGCTGTCGTGCCGGGTAAACGAACTCAAACGAGACGGAGGCGGCTTGCAAGTGA
CACTAAATACTTTCCGCGCGTCAAACATCTATTGTATCTAAAATCTGTTATAGCAGTCGT
ACGGACAGACACGTTCTTAGATCTTAAATGTGACGAAATTAATGCGAATTAACTATTACT
GTAATGTCTTGATTTGTTAATACTTAAAGTTTTTTTGCTCTTCCAAAAATGTATATAAAA
CATTTTATGTATTTACTTATCGTCTTATATGGGCAGACTGAGTGAACTAGATTTTTTTCT
GCCATTATAATGTCGTATAACAAACAGTACTTAGAGTAGACAAACAGTTTCCTAGCTTAC
GTTTACGCAGCCTCCGCGCGTCTCAGCTAAACATCGTCCGTGCAAGCTCACGAGGGTATC
GAGTCGAACGTGTACTCTCTGTAATATGTGGGGTGGCCGTGTCTTACTCGTGTGAGCGAA
CTTTCGGCGACCGTCGTCTCGTTGCCGCGCCGCCTCTGGTTGGCCAGCTTCTGTTTGTTA
ACCGGCGAACCGATATAGCTGAGCATAACCGGCAGGAATACGAGTCCGTGGGCCGCACCG
AACAGCACAATCCCGAGGTACATCCGGAAGTAGAACACCTGGAAGATCTGGCTCTTGGCC
GTGGCGAGCACGATGATGCCGCCGAACTTGGTGAGCGTGATGCCGGACAGCACGGACGAG
CCCATGCGCAGCAGCGCGTCCGCCGCGCGCTCCCCGCGCCCGCGCCCCGCCGACACGCTG
AACGAGTGCACCAGGTGCGAGCAGAACTCCACCGATATGCCCACCGCCATCACCAAATTT
ACAAGCGAGACTGCATTCAAACTGATGCCCCACCAGTACATGAGGCCGCCGAGATTAACA
ACAATCATAGTGATGGTCACTACGACTACAAGAGCCGAGAAGAGATCGAAGCCCATGAGC
ACGAAGGTGACGAAGAATATGGAGAGCACGGAGATGCCCATGCTCTTGAGGGTGTCGGAC
CACATGGTGAGGTACTGCTCGTAGAAGACGTAGAAGACCGAGTAGGGGAAGACGTTGACG
GTGGCGGAGTGTCCCAGGTCGCGGAGGTGCGCGTTGAGCGTCTCCGTGAGCGAGCCCGCC
AGCGCGCGCGCCGCCCGCAGGCTGCCGTAGTAGTCCGAGCTGCTGCGCAGGACCGTGTGG
TAGCTCTGGTAGTAGGTGGCGCCGATCCCGGTGGTGTTCTGGCTGTGCGAGCGCAGGTTG
ACGGCGTGCGAGTAGGCCGCGTGGCCTCCCTTGACGCAGCGGCTCGACGGGTTGTCCTGC
AGGAAGTACGGCAGGTACGTGCTGAAGTCCTGCGGGCTGGGACGCTCTTCCGGCTGCACC
AACTTTATGTTGCAAGCGGCACAATCGTCGGGTTGAGTGTCGCTGGGACAGAAGCTGTTG
TTGGACTGGAAGTAGAAGCAGCACTCCGGTGAGACAGACCAGTCGAAGAAGTCGTCGAGC
CAAGAGTTGGCTGGAGCCGCGATGTACGTGTCGGCCGGGCTGCGGGACGCAGCGTATATC
TGCATGGCGAGACTGTCGGGTCTACAGAACCTCGAGCCGCACAGCAAGTTCTGCACGTCG
GGGGTGGAGTAGTTCAGCTTGGCGTCCGTCTCGGCGTCCGTGAGCACAAAGTAGACCGGC
GGACCGATGTTCAGGTAGCGGTTCAGATGCTGGAAGTACTTCAACTGGAAACTGTCGTGG
GGCATAGACAGCTCTTGGTCTAGTCCGATGTCGATGTGAGGCGCTACAGCAACAGACGAG
CAGAGCCAAGCAAAGAATATAATCATGACTGAGGCTCTGACTTCCCTCTTCATCAGGAAA
GGTACATAGAAATGTTGAAACAGGTTGTACAATGCTCCTTCACCTTGTTCTGCCAGGTCT
GTTTTGGTGCCCCGCAGACAGCAGAATATATCGAACCTGTTGTCGAGTTGTCGGCGCGTG
TCCAGCGCCAGCAGCGCCACGAAGCAGGTGACCTGCAGCAGGAAGTCCACGAGCAGCGCC
ACGGCGGCGTACAGCGCGAAGGCGCGCACGGCCGGCATGTCGCTCAGCGCCCCCAGGAAG
AAGCACACCGACTCCGACACCGACGTCACGAACATCGACGGGCCCACCTTGCCGAGCATT
CTACCGATGTGTTGCTCGACGGTCTCGTCGGGGCGGCGCGGCTCGCGCTGGTGGGTCTGC
ACCAGGATGAAGATGTTGTCGACGCCGACGGCCAGCACCAGGAACGGGATGACCTCCACG
ATGATAAGCGTGGCCGCCACTCCATAGAACCCGAAGATGCCCATGGAGCACACCACAGAC
GCCAACACGATAACCACACCGCCGAGCCCGAGCGTGATCTTGCTGTCGATGAGCAGCCGC
GAGAAGGTGGTGAAGCGGCCGAGCGCGATGGCGATGTACGCGAACATGATGAAGTAGGAC
ACGAGGATGGTGTACACGTCCGACTTGGACTCGCGGTCCAGCTCGTCCTCGATGGAGCGC
TCCGACGTGTACGCGATGTCCATGTAGCCCGGCATCGCCTTCTCCGTGTAGTTCTTCATG
AACGCAATGAACGTCTTCTCCCACTCCAGTGCTTGTTTCAGCTGGGACTTGTCCTGCTTG
TTGTTGACGAGAAAGGTGAGGATGAGTGCCTGCGCGCGGTGGTAGGGCGCGTGGGCAGAG
AGCTGGTCGCCGCGCGGCAGGAAGCCGCCCAGCGCCACGCCGGGCAGGACGGGCCCGCCG
TACGACGACAGGCAGTCCACCGAGATCGGGTTGCTGGAGCACTGCAGGATCTTGTCCAGG
TGTTCGTTGTCCTCGTAGGAGAACTCGGACTTGTCGTTCTGCCACCAGCCCCACACGCTC
TGCAGCACGCAGTCCTTGCTGGTGACGGGGCCGCGGAAGGGCGACGACAGCGGCGCGTAG
CAAATGTTCTGGATCCCGGACTCGTTGCCGAGCTCTAAGATCTTGGACTGCAGGTCGAAC
ACGTCCAGCATGAAGGTGGCGTTGAACACAGGCCCGAAAGTCAGGTTCGCGTGTTCGATC
TCGGGCAGACCTTTCGAGCTGATTATTAACATTTCTGTCCTGTAGAAAGGTTCGAAGTAG
GAATCGAACCGCTGCCTCTCGACCCTGGAGCGCGAGGTGGGCGAGGCCCACAGCTCCACG
GGGTCGGTGGTCACCTGCATGTACGTGATGCCGGAGCCGAGGATCACCACAACGCACAAA
CCAGAGAAGAGGACCAGCCAAGGCGAGGAGGCCATGACGCAGCCCCACCACTGGAAGAAG
TCTTCAATTTTGGATTCCGTCGCAGCACCGAGCTTCTCGAGGAACGTCGCGTCTGTCTCG
TCGCCATCGGTGGCCTCCATGGTCCAGCGCGTGCCCGACGCGTTTGTTCCCATCTCTTGA
TTGTTGTCTGAAGACACACCAACGAGGTTTTCGGTTTGATTGCAACAGAAGACGCCCGTG
AGGAACAGCGTCGAGAAGATACAGAATACGATGGTCATGACGATTGCGTAGCCGTCGAAG
CCCGCGATGGAGAACGGCTGCGGGGGCGGGGGGCGCGGCGGGGGCGCGCGGAGCCGGTCC
CACTGCGAGCAGAT
(6014 bp)

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