SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13684_c0_seq4
Scaffold_idBomo_Scaf640
NCBI non-redundant
(nr)		PREDICTED:_transcriptional_regulator_ATRX_homolog_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
Transcript
Level		FPKM:2.76 TPM:2.78
ORF EntryO_BomoSK15313_complete:A_BomoSK_comp13684_c0_seq4
Sequence
(Nucleotide)
GCTCGGGTTCTTTTTCACGACTGTTTTGGATTGTTTAACTACCTTGTCTAAATTGCCGAT
TTTTCTGACGGAAAGGGCATTATGTGGATTGTTTTTATTTATTATAAATGTACTAATATG
TAATAATGTGTTGCAGTTGTGTTCAGTAACAGTTTCGGTCATATAATTGCTTAAAAAGAT
CCGCTCAGCCATTTACATGAAAGATGGTCCGATCTAAGACGAAGCCTGGGAGCAGCATCA
GCCAAAATTCAGACACTCAGGATGACAAAGATGTTGATAGGCTTACAAACTTGGATGCGT
TAGAGAAACCTCGTCGACGTGAAACTGAAGATAAGAGGAGTAGAACAAATAACAGAGCAA
GATCTAAAGCAAACGAAATAATCGGTGAACAGATGCTCGAGCCGGACACTAGTTCTGATG
TTGCTTCAGAAGCCGGGAGCGATGTTTGTGAAGAAATACCACCGGTAACATTTAACAATG
GTATTGAGCATCTCAGTAAAAGTGAACTGCTGGGAGAAAGTGACTCGTCGATTTCAAATG
AAAAAGAAAAAAGTTCAGAGAACACACCGACAGTGGACGAGTCTGAAGATGACAATTTAA
AATCAAAACGACGTAAGGCGAACGCCATCTCGTCGGACTCTGAAGCCGGTTCGTCTCGCA
AGAAGGAGGACCGAGAAGTCAAGCTGAGCGACTTCGAGGACTCTGAGGAGAGCTCTGAAT
CCAACAAGAAGAGCAAACGGAAGAAGAAGGGAAGTGAAAGTGACGCGTCCGGGTCTTGTT
CCGATGGAAATAAGAAGAAACGGCGTAGAATCAAACAGATAAATGAGAGCGATTGTTCAG
ATTCGGAAGAAGAGACTGAGGGTAGGAATAAACATGGAAGGAAAAATATACGTAAGGTTA
TGGGTAAAGACCAGCTGGAAGAGGCTACCAAAAAAGCGGCGCGCCAGGAGAAGGAGAGGA
TTGCTAGAATCGCTGAGAGACAGAAATTGTACAACAATCTGGAATTTGATGAATCTGGAA
AACCTGATGAAGTGGTCTTGGAGAAGGTTGTTCTTGATTTCGACCCAGAGACCAAGGAGC
CGCTCATACAAGTTGACAGAGGCCTTGTCAAAAAACTAAAGCCACATCAGGCAAACGGAA
TAAAGTTCATGTGGGATGCGTGCTTTGAAAGTGTGAAACGTATAAAAAAGGACAAGGGCT
CTGGGTGTATTTTGGCACATTGTATGGGCCTGGGAAAAACGTTACAAGTGATATCGCTGA
CGCACACGCTGCTGACGCACGGGTCGCTGACCGGCGTGAGCAGGGTGCTGGTGGTGTGCC
CGCTGTCCACGGTCCTCAACTGGGTCAACGAGTTCCGCATGTGGTTGAAACACGCCGAGA
ACAACTTTGAAGTCGACGTGTACGAACTCTCCAGGTTCAAACAAAATTCAGAACGCGCAT
TCCAATTGAGTCAGTGGTACAAAAGCGGAGGTGTTTGCGTTCTCGGCTATGAAATGTTCC
GGAATCTCTCAGCCGACAACACTAAGAAATTTAAGAAGAAAATGCTCAAGAACTTCCAGG
AGAGCTTGGTTGACCCCGGTCCAGATCTAGTAGTATGTGACGAGGGTCATCTTCTGAAAA
ACGAAAAGACAAGCCTCTCGCAGTCTATGAACAAAGTGAAGACGCTACGTCGCATCGTAC
TTACTGGGACGCCCCTACAGAATAATCTGAAAGAATACTACTGCATGGTGCAGTTCGTGA
AGCCGAACCTGCTGGGCAAGTACAACGAGTACCTGAACCGTTTCGTGAACCCGATCACCA
ACGGGCAGTACACGGACTCCACCGAGCACGACATCCGCGTCATGAAGAGGCGCTCGCACG
TCCTACACAAGATGTTGGACGGAGCAGTGCAGAGGAGGGATTACGGAGTGCTAGCGCCTT
TCCTGCCTCCGAAGCACGAATACGTACTCTTCATTACTCTCAGCGAAGTACAAGTCAAAC
TGTACCAACATTATTTGGAAAACTATTCACGAAGGCCGATGCCAGGGAAATCATCAGGAT
TCCTGTTCCCCGACTTCCAGTCGCTGCAGAGGATATGGACGCATCCGCTCGTTCTCAAGT
ACAACTCTGAACGCTACGAGATTATGCAGCAAAAGAAAAGAGAAAGAGAAGAAGAAGACT
CCGAAGGATCACTTGTGGACTTCATTGACGACGACTCCACGCCTGAGGAAACTTCAACAG
AGGAGTCTTCCGACGACTCATCAGATGTGAGTGACGACAGTCAAAAAAAGAGTAAGAAGA
AGAAAGCAGCTAAGAAGAGCAAGGCGAAAGACTCTAAAGCTTCGACGCGTCGGGGGACCA
GGGCCAACCCAGTGGAACAAGAAGATCATCATTCTGACATCGAGGAAGTGGTTGAGGTAA
AAAATGAAAATCCGACTGAGTGGTGGATCAAACTTGTCACCGAGGACGAGCTGGAAGACA
TGCGGCACTCGCATAAACTTGTTCTGCTCTTCGACATATTGAGGCAGTGCGAAGCCATCG
GAGATAAACTATTGGTGTTCTCACAATCTCTGTATTCATTGGACCTCATAGAACATTTCC
TAGGTAAAGTAGACGACGCGACTCAGGCAGGCCGGATCGATGAGAAACTGGGCGGACACA
TGGGTTCATGGTCTCCCGGTATAGATTATTTTCGTTTAGATGGCTCTACGTCGTGCGAGA
ACCGCTCCATTTGGTGTAAGAATTTCAACAGAGAAGATAATCCAAGAGCAAGATTATTCT
TGATCTCTACTCGGGCGGGTGGCCTCGGAATTAACTTGGTGGCGGCCAATCGCGTGGTCA
TATTTGATGTGTCTTGGAACCCTTCGCACGACGTGCAGAGTATCTTCAGAGTCTACCGAT
TTGGACAGAAGAAACCTTGTTATGTGTACAGGTTTTTGGCCATGGGCACAATGGAAGAAA
AAATCTACGAGCGGCAAGTAACCAAACAAGCCATCTCGAAGCGCGTGATCGACGAGCAGC
AGATAGACCGGCACTACGCCGAGAACGACCTCGCCGAGCTCTACAAGTTCGAGCCCGCCC
CGCTCGCGCCCCGCGAGCTCCCCGCGCTGCCCAAGGACCGGCTGTTCGCCGAGATGCTGC
GGGAGCACGAGCTGCAGATTTACAAATATCATGAGCATGACTCACTATTGGAGAACAAAG
AAGAGGAGACTTTAACCGAGGAGGAACGTAAAGCCGCCTGGGAGGACTTCGAGAACGAAA
AGAACAGACCGCCTCCCGCGCCCTTCCCCTCCGCCTGGCCCATGCACAATGGAATGATGC
CGGGACTACTGGCGCAACAGCAGCAGCTGGCGTACGCGGTGGCGGCCATGCTGCGCAAGG
ACATGCCCAACATCACCGACAGCCAGATCCGGGACATGTTGCCGATGATATACAACTCTA
ATCCTGCGGTCGGTGTGAGTCGATATTGAGATTATCATCATCATCATCAACAGCCCA
(3477 bp)

- SilkBase 1999-2023 -