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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13611_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_RNF168-like_[Papilio_machaon]
Ontology
GO:0000151 C ubiquitin ligase complex
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0016925 P protein sumoylation
GO:0031491 F nucleosome binding
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0035518 P histone H2A monoubiquitination
GO:0035861 C site of double-strand break
GO:0036297 P interstrand cross-link repair
GO:0036351 P histone H2A-K13 ubiquitination
GO:0036352 P histone H2A-K15 ubiquitination
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0043234 C protein-containing complex
GO:0045190 P isotype switching
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070534 P protein K63-linked ubiquitination
GO:0070535 P histone H2A K63-linked ubiquitination
Transcript
Level		FPKM:1.96 TPM:1.97
ORF EntryO_BomoSK14789_5prime_partial:A_BomoSK_comp13611_c0_seq1
Sequence
(Nucleotide)
CTAGCTTAGGGTTTTAATAAAATTAAACTTAAGATGATGTTCTTAAGGTTGTAAACTATT
CTAGCTTAAGCCCAGAATAGGCATTTTCATGAACTATAATTATTTTTTTACCTTTTTTAC
AGCTAATAAGTTTAGGGTAATAACAAAAGCAGATGGTAAATTTTTTGATAGTGAAACGTT
TCGGAGTCGGCACAGTCCTTCCAGGTATTGTGCACGAGTAGGGGCATTTTCCTTCAATGG
CGCGATTTCTTTGTCGATTCGTCGGCACGGTATCCGCAGTGGAAATCCTTTTCTCCCACT
AGTTGGTTTAGTTCCTTCAATCGGTTTGAAATAACATAATTCTTGTTGCATTGAATCCAC
ACTTCCAGTCTCTTTACTCCTGTGATTTTCAGAAGCATTGACCTTTTGACGAATTCCAGT
GCAAGGCAGAGGTAAAGATACAAGCAAAGAATTTTTAAACTTTGGTTTTACTGTATCACC
TAATGCTTTCTCACTGACTTTATCCTTATGTTTCTCTCCATTTTCTTTGTTCCACACTTT
CTTGTCTATGAAATCTTTGATTAATTTACCATAAGAAGAAATTAATTCCGGTGACCTGGA
TGTTACTTTTTTTTCACTGGTCGTTGCTGGTGTTAAATTATTGCATGAACTACTGGCTGT
TGTTGCAGGTTCTTTAATGATGGTAGTTTTCATTTTAGATAGGTAACCATCAATTTTTGC
TGTTTTCAGTTTGAATTTCATTGCCTCTCTTTGATTTTGCCTTGTGTGTGCATTTGTAGA
TGAAGCTGCATTATCCATGTGCTCTTTCTGGATTTTCAAGGCCAAAACTTCATCTTGTTT
TAGATTTTCAATATATTTCTTATGTGCTTCTTCTTCTTCTTGTTGAATTTTTTTAATCAG
TAACTCAGTTTCCTCAATGTGTTTTTCTTCAAGCCGTTCTCTCTCTGCTTTAAGGCGCTG
AAGTTCCTCTTCATATTCTAATCTGATTTCACCAGGCAAACTTAGCCTGGTTACAGGTTT
TTCTTCTGGAAGAACGATGTCATCGCCTCTTGATTTAATATCTATTTCTTGAGGAAATTT
ATTTTGAATGAAGCTCCACAACTCAAGATTTACTAAAGTTTTTCGCTTTGTGGCCGTCCT
GAGCCAGGATCCAATTCTTAATCGACAGAGAGGACAGCACAAGGCATTATTTTCAACACT
TCCATTGAAACAACGATGAC
(1220 bp)

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