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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13596_c0_seq1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		PREDICTED:_regulator_of_nonsense_transcripts_2_[Amyelois_transitella]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:10.35 TPM:10.41
ORF EntryO_BomoSK14753_complete:A_BomoSK_comp13596_c0_seq1
Sequence
(Nucleotide)
CGTTAATTTAAATTTACACTTAAAAAATTTACAGTTTTGCGTAAAAAAATTTGTTCCATT
TGAAAAAGAAAAAAAACCCTTTTTTTATTACATATATTATTACAATACATTACATACATT
AGTTTTTTATTTATTTAAATTTCTTAGGACCGAATATGAGATCGGCGTCCGGTGCCCCTT
TGGGATGTTGGTATTTCTGACGAACATGCTGACCTCTGTTAGGATTACCGATACCTCCCG
ATCCACCACCGCTCTCTGCGCTATATTCTTCTTCTTCTTGTCTTTCCGATATATTTAGAG
TAAGTCGTTTAACTCGTTCCATTTCTTGTTTATCAGCTAAAGCTTGTTGTTGTAGATTGC
TGGCCAATTCCGGTGGAGCACTGAACGATTTATATTGTGGTTTCGTTCCTTTACGAACCA
TAAGAACGAATTCCACGCCCTCTTTTCCTTGCAAGAGCTGTTCATACGTCTTCTTCGTAG
TCTGTCTGCAGGTCATCGGGACAGCAATGTCGCGTTGTTGCGGTCTATTCTCCCGTTGTC
TTTCTGCAATATTTTCTGTTACCATTTTCTCGAATGCCGATTCGAACTCAACGTCTTCTA
CATGTTTAGTAGCAGGTCTTCGTGGCTCAATTGCCATTTCATCTTGCATTTCGTTTTCGT
CATTAACATTATTTTCGGTAATCGGTTCTTCATCAGAGCTTTCATCAGGCAATTGCGGAT
TGTCCGTTTCATCATCCGTTTCCATGATTGTGTCTAAGCCGTCGTTCACACTATCATCAC
CTTGATCCTCATTATCGTACTCTTCCTCTCCTAGCTCCGGATATAAAGTCTGTCGTAGTT
CATCTATTGCATCCTTACACTGTTGCCAGCTCGTAAACAAAGTCAACTTAGGGCGTAAAG
TCGTCAGGCATTCTTGATAAATATATTTAACGTAAATAGGGAATTGATAGTCTTTTGTCC
ATATCGGATCAGAGAACTTGAACCAATAGTAATTTTGGAAGAAGGTCAAAAAATAGTCTA
ATCTTTTTTTGCTCGAACCACTGTTGAAGTATGCACCACAAGTCTCAAGCAGAGCGCAGA
CTAGTCTTATTCTAAAAACATTATCAGATGGGTCCAATACAGATACACTGCTGTGATCAT
TGGTGACACCAAATGTTATAAATGAATATAAAACAGTGAAAACATCTCGAGAATCTAATA
ATTTATAATTATAGAGTTCTCCGAGATACCGAACAGTAGCTATCCTTCTTTGATTATATC
TTGGATGTGGGTCTTCCATTGTTACCCTTATTTCTTCTAATATTGTGTCAACGACTGCTG
GAGCTACTACTTCTTGCCAGATTGCCAGTTCAGCTGTCAGTCTGGCCAGAGCCCTTCTGG
CACTTGCTCTTACCCTCCAACCTCCTGCGAGATGTTGTATGGCAATGGCGGATACCTCTG
GGTCATCCCAATTCAGTTTTCGCATTAGTCTAAGAATTTTTTCCTCATTACTTTTCTGCA
AGTCTTCATGAAGTATTTTTCTGATAAATTGATGAAGTGGTGGCTCTTCTTCTTTAGGCT
GAACAGGAGTTTCGGGAGGGCAAACGTAATAGAATGCGTTTTCTATCTGTGTTACATATC
GCGAATCTAGAGCTGAAACAGTTTTTTTTCGCATCATTTGCTGTAAATATATCATAGTCC
TTTGGTGTGTATCTGGATTACAGTATAAATATCTACCACACGTTTCAAGCAGATTGCAAG
CCATCTCAATATGGTGATGCTTAAAATCATGCAGCAACACTTTCAAACAGTACAGCGCCT
CCATTTTCGAATACAAATTAAACTTAACCAGTTCCCCAATGAATCGCACCACTTTTATCT
TCGATTCAATATTTATTTGATCCTTTTTCCTGACATGATACTTAAAGTCTTGTTTTAACA
TTTGACACAGGTCAACACATACTTCTGGCAGTACTGGATATAAAATCGCAGCAAATCTTG
AGTAAAATGGCAACAGATCTAGCCTTGTTCTGGCAACACTGAAGAGAACTCTTGAAAGTT
TCTTCCGATTATTCTTTGTATTGAGATTCAGGATAAAATCAACTGCTGCATTATCTATGA
GTTCTCGGTTGATACAGTTGGGAAGTTCATTCAAAAATGTATCTAATCCATGTTTATTGG
AAACATTTGGTGGTTGTATTTCTTCAGTTTCTACTTCTTGAACTACAGATGGGTCCTCAT
TGTCACTTAATTCATCCTCCTTCAAATCTTCATCTAACATTTCTTCTGTTACCGTTTCAG
TTTTGCTTTTCACAGTCTCTTTCATTTGATAGTTAGGCATAAAAACTTTTAAGTCAGGCA
AGCATGTATAGAATGTTCTAGAATCTTCGTCCTGCCAAGGATCAGTACCGGCTTGCATAG
TGATGTCTTCATTGCCACCAATGGTTACACTTCCTTGAGTCTCTATAACAGTCAGGGACA
AAGTGGGAGGTTCACCAGCTTCACCCAAATCTTCTCCAAGAACTTCAGCAAAATTTTGTG
CATTTACTAGTAGCTTGTCATAAGTTGTTTGATGTTGTTCTAATTGTTCTTTTCTTTCTT
GTGAGAGTTCTCCTCTGGTGTGCAGAGTCCTCTGATTTGCTGCATGCAGAGCTTGAAGTT
GAGCTCTTTCCGCCAGCAGATGTTTGGTTAGTGAAAGAAAGTAATCTTTCAAGAGAGTTC
TAACTGCTGTTTGTTTCTCTGCCGGTAAAAATGTATTTCGAGGAACAGGAATATTATGTT
TCTCAGAAGCTTCTCGTATTTTTCTAGGCATAAGTCCAGCATAATCATCACCACAGTGTT
TGCAAAATGATAACAAAATTGGTATATTGTTATGCTCTTCTTTGTCCATGTTTATTAGAA
CAGTTAATACATTACCCAGCAAAGGCAATCCAGTTTTATTCATAAAAATACCGACAGCCA
CTAATTCTGCATAAAATCTTATATCCACCCGCAGTTTTGATGAATTTGTTATTTTATCAG
TCGCTTTGAATGTTAAAATCTTTTGCCAGTTTTCAAAAAAGTTAGATGAAAAATCAGCGT
AAGTACGATGAAGAACTGAACATAGAGTTATAGCAGCAGGAATATCAGACATTTTCAATT
TTGCTTCTGCTATTGCAGCAGCCACTTCTGATATATATTTTGTAAGATTTAATGTTGCAA
AATCTTTCAAAAGTACATCCAGCTGAGAAGCACTAAATGATTTTAGTTTTTTTACAAATG
TGGTATTCTTTTTCAAACCTGAATCTAGCTTGGAAAAATAATTTTCTGGTGGTCGAGAGC
AATTCAAATTTTGATTACGTATTTCATATTTTTGTTTCAATCTGGCTTCCAAGTTAGCTG
TATACTCTTCGAGAGCCGCTTTCTCATTTTCTTCTAAATCTTTAAGCGGTTCTTCAATAG
GTGTTTCGTTTGCCTCATCGTTGTTGGTGGCAGTCATTTTATCTTTTAGATAGGTATTAT
TTGAAGCCAATGGACACCACTATATGGTGTGAGCAACTTTCTTTTGCATTTATTAACTCA
GCAAATCACATTTAATTCATTTAAAAATTTACAAACATTTGGGTAAGGTGTCATAAATAT
TATGTGTATTATCTTTTT
(3618 bp)

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