SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13544_c0_seq1
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		PREDICTED:_uncharacterized_protein_LOC101739643_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000792 C heterochromatin
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005721 C pericentric heterochromatin
GO:0006281 P DNA repair
GO:0006334 P nucleosome assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0010571 P positive regulation of nuclear cell cycle DNA replication
GO:0015616 F DNA translocase activity
GO:0016568 P chromatin organization
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0030900 P forebrain development
GO:0031297 P replication fork processing
GO:0031933 C obsolete telomeric heterochromatin
GO:0032206 P positive regulation of telomere maintenance
GO:0035064 F methylated histone binding
GO:0035128 P post-embryonic forelimb morphogenesis
GO:0035264 P multicellular organism growth
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060009 P Sertoli cell development
GO:0070087 F chromo shadow domain binding
GO:0070198 P protein localization to chromosome, telomeric region
GO:0070603 C SWI/SNF superfamily-type complex
GO:0072520 P seminiferous tubule development
GO:0072711 P cellular response to hydroxyurea
GO:1901581 P negative regulation of telomeric RNA transcription from RNA pol II promoter
GO:1901582 P positive regulation of telomeric RNA transcription from RNA pol II promoter
GO:1904908 P negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric
GO:1990707 C chromosome, subtelomeric region
Transcript
Level		FPKM:1.35 TPM:1.36
ORF EntryO_BomoSK14495_complete:A_BomoSK_comp13544_c0_seq1
Sequence
(Nucleotide)
GACCAATTTACCAAAATGGTGGAGTTTTGGTGTCGTCTAACTCTGTAAAATTACAGCATT
GATATCCTTGTTTAGCCTAGATGATTAAGTTTTATTACAAACGCTGTCAAAATATAAACA
CTTTTATATTTTGCTAATGAGGATACCTAATGACCTTGGTACAACAATGAGTGAAATTAT
TAAAAGTGAAGGGGCTTGTCCTGCACCAGAAAAGCCGGCTTCTTCGGATGAGAATGTACA
ATTCCCGCCTTTACCTGAACCAACTGATGAAGATTTTCAGGATGATCTTAACGAAGAAGA
AAAAGAATATATCAAAACTAAATTTGCGGACTTGAACACTATTACTTCTCAACGACTACA
TTGTACAGCTTGTGATCGTCATCTCGGTTCTTCGTCACGTAATTTATCTCGTGTGAAGAT
TCATCCTTTACTACGAACACTAGTGTGTCAGACATGTCACATCTTTTACAACAGTGGAGA
GTTTGAGAAAGGTGATGATGGATCTGAACTTTACTGTCGATGGTGTGGCCAAGGAGGACA
AGTATTCTGTTGTTCTGACTGTCCTCATGTTTTTTGTGCGGTAAATATTTTGTTGGTAGT
TTAAAATTGCTCTTAAGTATTTTGCAAGAAATAAAACATTTGAATATTGCAGAAATGTAT
TAAACGGAATTTTGGACAATCAAAAATATTAGAAATTAAATGTGTTGATGATTGGAAATG
TTTCAAGTGCAATCCTGAATGCTTAAAACACCTGCGTGCTGTATGTTGGGCTTTGTTTCA
ATATTGTAAAGCAAGGATTGAAATTGCTACTTATACTGTGGACACTCAAATCAGAGAACT
TTTGACGAAACAATGTGCTGCTGATGAATCTTTATGTTGTAAGAATAAAAGTAAAAGAAG
TGAAAAATTGGATCCTGTTAAGAAAAAAGAAGAAAATGGCCCTAAAAAACAAACACCTGT
ACCCATAATATCAAAAATTCCTCCTACTATACAGGTGAAAAAATTTGCATCAATAAACTT
GGATGAAACACCAAAGCAAGAAAAAAAACCTATAAAGAGACCAATAAGTCCTAAGAATAA
ACCAGTTATTGTTAAAAATCCAATTCCAATAGCTACATCAGTTACAAGACTTTTGCATCC
ATTAAATATTGGACCTCCAATGAAGAAGTTGAGGATTGCAAGTCCAATGATGGGCACCAT
TAGATATGTGAATGATACCAGAATGCAGTCTTACCAACGATTAAGGCCTAAAGCTCCCAT
CAATATAAACAATTTCAATGGTTTTAAAAACACAAATCCAATATTCAATCCGATCAGTAC
AAATTCTTTTCACAATAGCATGGAAAACATGGTCGCCAATGACAACATCAACTTATCTTT
GGATAATTTGACTCAGGGCTTGGACATGTCAGCAGCTGCCGCTCTACTGTCAGCAAATAA
TTCTCAAAATGATGATGTTGTTTGTACACCGGATCTTCCTATGGAATCTTTGAATGAGGT
TAATGAAGATAACGACGATGACGTCGAATGTATAACTCCTGGACCTTCAGAGGCACCCAA
AACATACAAATTTCAGCATCCCCCACCTCTAGTGCCTTGCGGGAATAATAGTGCAGTGTC
TTTATCGTCAGATAATATAATTCAAATGACCGAAAACGACGTCACAGTGAATGCGTTAAC
AGGCGGCTTGAAGTTTCGGGTTGACCCTCAAACTTTGTCTTCAAATAAAATGTACAGGTT
ACCGGATGGCCGCGTGTTTGCGATAAACATAAATCCAAAAATGCCCGGTGGCTATTCCGC
AACTATTGTAGCTGTAACTGATAATACTAATAAAGCCACACAAAGTAAAGGTACCACATT
TGCCGCTAAATTGAGTTCCGTTTCGACTCCGCAATGCTCTTCCCCTGTTACGCCAAAAGC
ACGAAGAAGCCAACGTCGATCTTCGTCATCAAAACGTAGTTCTACCAAATCTAAAACAAC
TCGCCAGTCGTCGAGGAAAAGTAGCAGAATGTGTGATTTGAATGTTCCGGTAGAATGGTA
CAGATATAATCTTATAGACGCAGTTGATGCCTTAGAATACTCATTAAACAGACTACAAAA
ATTAAAAAAGGAAGCCACAACTATGTATCTTCGAACTAGGACTATTAGCGAAATGAAGAA
TCTCCATAAAACGTTAGATAGATTATTGACAACGTCATCAAAAAGATTTGGTGAAATCAA
AGATAATCTAAGCAATGAGTTGAAACAGTTTATTTTGAGAAAAACAGATAACCAGCCCGC
AAATAGTGAAGACGACGACGTTGAAATTTTATCTAATGCTGAAAATGATGATCCCATATT
CATAGATGAAAATTCTGTGGAGTCAAATACAAATTATAATGAAAATCAAGAGGTCGATTT
GACTGGGCCCGGCAGTAGTGAACATAATGAAACTGGCGAGAAGGAGGACGATTATTCTAG
AATGAATGACGAAACTCTAATCATACCAGACCAAGAAAATGAAAGCATTACGAGTATTAA
TGAAAATGGCCAGAATATAGAAAATAACTCATCTGTTATTGGAGAAGGAGAAACGAGTTT
GAAATGTGTTGAAGCCCTGATAGAAACAAACACTACAAACAGTGAAAATAATTCAGTTGA
TGATTTCAACTTAGAAAATAAGTGCATGGAAAATGAAAAACCTCTAAAAACATTAGAAAG
TATAACTGAAAATAATGCGACTACGGGAAATGATAATCGTAATGAATCTAATGAAAGTAA
CACTGATCTGACTGAGGGTTCAGAAGACAATATCGCTTCTAAAAACCTTAACAGCGAAGC
GACGGTCGAAACCAGTTTATCGAATGACACACTCAACTTGGAAAGCGATAAAGTACAGGA
TTCAGAAATAAGCGAGGAATTGATTGAGTCTTTGTTAAAGGACGATAGCTCTACAAACTG
TAAAGATTAGAACATAAATAATCCTATCTGGTTATTGTATTCAGAGCTTCTTTTACAATT
TTGATGGCCATCTAAGAGCAAATGAAAAATCGATTCAGCTAATGGATAAATTTATTAATA
GACTGCTCCTTTAGTATATTGTAATTAGTGGGACACTATAATATGTGCTAGTTATAATTA
CGTCAAGTAAGCAACTATTTTTAGGTTAAGAGCAGATGTTTTTTTTGTACCGGTTTTCTA
ATCTGAAAACTATTTACATGAGTTCGTAATTTGATCATCGAATATCAAGATATGTATTTT
CAAACTTAATAAATAATAACATTGTTAAATATTACACCAGTAATATCAAAAATTCAAAAA
AACAAATGTGAACTATTTTAGATTATTTGCTATGACTTGTAATAAAAGTACATATTTATG
TTAATATTTCTGTCAATGATTCATACACATAATTCAAGGCACAGAAATCAAGGATTTTTT
TGTCGTTGTATCGATAAACCATAAACAAGTGTGATAAGCCCTTAAATAATAAGAAAAACA
CATTTACATGTTACAGTCAATTTCATTTACTAAATAATTTCACTCAATACTGATAATTCA
AGGTATCCAACTGCACTAAAATATATAGAAAATTATAATTTCATATAAAATTTAAATTCA
CTACTCTGGGATCCGATTTTTTCCTAATAATTTCTTTATGGGCATTTAGGACGAAAAGAT
CTATTCGAGTGTGAATCATAGTGAATATGCGGTAAATAAAAGACCTACTAAGCAAAAATG
AATTTGAATCATATAAAATATTTCGTTAAATTTAAACAAAATAGGTATATTTAAATTGAA
TTGGACCCGCTAAACAAAAAGTAGTCGACACGCAAAATCGCATTTTATTTATTAAAATTC
AAACTGATGTAGACGTGAACGCATTCCACTACTGGGAACAAAACACAATCCTCTTGGAAG
TTATAGGACAGGACGATCAAGTAAGTCGAAGGCATGCTTGAATGAATTGGCTTGATTCGA
CATTCAAGCAGTTACACGAACCTCTATTTCAGTCGCATCAAACTAATCCAGCCCTGTCAA
AACATCAGCTACAAACAAAATCTCTATAAATATAAATATGTTCACTACTCAACTACCCAT
AGACACAGCCCA
(4092 bp)

- SilkBase 1999-2023 -