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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13460_c0_seq2
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
Transcript
Level		FPKM:66.29 TPM:66.68
ORF EntryO_BomoSK14106_3prime_partial:A_BomoSK_comp13460_c0_seq2
Sequence
(Nucleotide)
GGCGCCTGCTGCGGCGTGCGGCCCCGCATGGCGTGCGGCGGCGAGCACCCGCACCAGTCG
AACCCAGAGCGTCCGTGTATCATCTGCATCATACGACGTTCGCGAGCACGTAGGATCTCC
TCCTTCTTCTTCTTGTCCGAAGGTGGTTTCGCCAGTGACACCTCCAAGCGGGATCCTCCC
AGGTCTTTCCCGTCCAATTCTTGCATCGCCTTCACCGCGCAGTCCCTGTCGTCGAAGTGC
ACGAAGGCATAGTCCTTGATCTTCTTAACTCGCTCCACGTTCCCGTAGTGCTCGAACTCT
TCTTTTAGCGCCTCCTCCGTAATGTCCTGAGTCAGGTTCCGCACGTACAGCACCTTCACT
TTGCTCATGGTCTGCTCGTCGGGTTCTTCTTGAGGGTCAGCCCAGTCGACTATAATATCA
CAGCCCCAAACCTTTATCCTCCCGGTGCCGAGTCTGCGCTTGGCCAGCGAAGCCGCTTTG
TGAGACTCGTATTCCAAAAAACAAAATCCTCTATTTTTCTTCTTGTCATCGGGCGAACTA
TATATAATGACTTCAACGAGGCCAGCTGTTAATTTACCAAACTCTTCCAGTATCTCCTCT
TTGCCTTTAGACTTGGGAATGTTGCCGACGAAAAGTCGCAGATTCGGTACGCTAATCTTA
ATTCTCAGAGTCTTCCCTGGTTTTATTTCGTGATTATCGAGCTCGTGCACGGCCCGCTGC
GTGGCGTCCCTGGTGGTGAAGGTGACGAAGGCGTAGCCGCGGTTGGCACCCGTCATGGGG
TCCATCATGAGTCGCAGGTCCCAGATAGTGCCGCAGCGTTCGAACAGCGGTATGAGTTCG
TCCTCGTACATGTCCTTGGGGATCTTGCCGCAGAACACCTCGCAGCCGGCGCCCGGCGTG
CCCCCCTCCCACCCGGGCGGCGGACCCCCATACTTGCGTTGACCTGTAGTCACATCTAAC
GTGTAACCGGTTCGGGCCAAGATTTGCTTTATCTTCTCCTCGTCGGGGCCCTTGACCTGC
ACAGTCGGAGTCAGAGCGGGAGCACCGGGAACGCCCGCCCGACTTTTCTGTCTATAGGTC
TTCATAACTCCACACAAAAAAGCACTTTTATTGGATACATGTTCGAGATTTGAATCTAAA
AATTGTCCAAGAACACTTAAAGCACCGTCGGATGGAAATTCTTTTAAGGCATCTAGAGCA
CGCTCGTCCAACTCTGCGTGCGCTAGCTTTCCAGTCTTATAAATGTCGTCGAGCTTGGCG
GCTACCTTAGGATCCAAGCCATACTCAATAAGTTTGTGGTAATCTTCTGTCCGGCCAACA
TCAGAATCCTTCCCAGCTACCTCATCATAGGATATTTCTCCATTGCCCTCCGCCATTCTT
TATTTTACAATTTTTGTAATTTTGTAACAAAATGACAATTCTCTAATCGTCCGAAAAACA
AAAAAACAAAAGATGTTCAAACATATGAAACAGTGAAACAATAAGATTGTGCACTCCTCA
TTCCATCCGGGTGAAGGCGAATTTCAAAAAGCGAATGCGCGGGTTATTGAATTTCTATGA
TTAGAGATGAACACAATTTTGGGCCTATTAATTTTGCTAGTTGTGGCCGAGACAGATATG
GCGGCACCGCGGTCCGCGCGACGTCAACGTGACCGCCAATACCTACGGGGTTCTCATAAC
GAGGCGCGTTCGCGGGATATGCAACGAGGAGTGCATTCAAACTTTTAAGGCCACTAAAAT
TTGCACAATGAATTCTGTTGATAAATTTCTAATCTCTCTGTTATAAACCTAATGACAGCC
GCAATGACCGATAATGTATTTTTTATTATTGCACAGAGAGTTTTTGCAATGGTTGTGAAT
AATTTTGAATGTGAAAGAGCGCGGCGCGTCGCGCAAGGCTGCCGGCCGCGAGGTGAGACA
GGCTAGCGGCAAGACGGCGTCGAGTGAGAAGCCGAGAACGAAGGGGGGAGGGTGTTGCAA
CCGCCGGTGCAGGCGTGCAGCAGCAACGCCGCAC
(2014 bp)

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