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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13449_c0_seq3
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:8.39 TPM:8.44
ORF EntryO_BomoSK14081_complete:A_BomoSK_comp13449_c0_seq3
Sequence
(Nucleotide)
CACGCTCTCGTTAGTAACACATGCGCCGGCGCCTCGCGTGCCCAGAAGCGAAACTTCGAT
ACAATAAAAAAATATTTGCTGAGCGATAATGTGATAAATATGAGTGTACTGATTGAACGT
TTTTGGTGCTGTGGTTTTGAATAATTGTATTTAGCGTGGTGTGTAGATTTTGAATTCGGA
ACGGCAGTATGGCGGGAATTTTGTACACTTTATTTTCTATACTACTCTTCCAAAGAGCAA
TTTCCAGTTACTTGTCTGGTGGTTACAACTTACTGAGACTGGACCAATTACCTTCCGACA
TACCGACAACCGTAGCACCCGACGGCTTTCCGGCTCCAAATTTCGCAAATCAATCCGTCA
CAATACCAATAAGCGACATCATCGAAATCGGGGATTATCTACCAACACCGTTTATTATCA
ACGCAGTGATCAAATTGGACGAACTAACAGCGACATGCTTATTCCAGTTTAAGAATAACG
TTGCTGACACGTACTTCAGTTTGTGTATGGAGCCCGCCAGCGAGTCTCTAGTGAGATTTA
TCTTCAACGGCCTCGATACGAGCCCTATAGAAACCGTAGTGAAAGTAGACAAAGATTCAT
GGACAAAATACACTTTTGAAATCGATCGCACCTCGTTGACCACTCGTTTGGACTGTATAC
TCTTATTTAAGCAGAGCACCGAGAGACCTACTATGGATGTTTTATTCGAACCGGATTCGA
CGTTGGTTTTGGGAGAGTCGCCTTACAGTGAAAAGAATTTTATGGGATCCATAAAGGAAA
TAAAAATATATCCGGACTCAAACGAAGAAACCATAAAAAATATTTGCAACGAGGATTTCA
AATTACCGAGTATATTTAATGAAGAAAACGAAGAGTCAACGGACAATGTAGAAGAACCTC
AATATATTAAAAACCCGGAGAAAGGTGAGAAAGGTGACAAAGGTGAGAAGGGTGAAAAAG
GACAAAAAGGACACCAATGTCTCAAAGGAGAGCCTGGAAATTCCGTCATCGGTCCAGAAG
GATCACAAGGACCTGTTGGGCCGCTAGGACCCCCTGGCCCCGTAGGAAAGCGAGGACCGA
AAGGGGAGTGTGAGTGCTCGCCTAATTTGGTATCGACTCTTTTGGAAACAATGCCTGAAA
TGAGAGGACCTCCCGGTGAAGCTGGTCCCAGGGGCGAGCCTGGACTTCCTGGTCTTCATG
GGGAGAAAGGCCCTGAAGGTCCTGCGGGGAAACCTGGCCTAGACGGTAGAGTAGGGGAGC
CAGGTCACGATGGTGTACCTGGACGAAACGGAAAGCCTGGGGAGCCAGGACCACCAGGAA
AAGACGGAGCACCCGGTCGTGATGGAGAACCTGGACTAAGAGGCCCACCTGGCCCACCCG
GTCCTGGTTTCATGGAAACAGAGGAAGAAAAGAAGGCTCGACAGATTCGGATACCTGGGC
CTAAAGGTGAGCAAGGCTCACCTGGCTTACCAGGGTATCCCGGGCCAAAAGGTGAAACCG
GATCAAAAGGTGACAAAGGAGAAATTGGACAACAAGGTGCAAAAGGAGAAGAAGGTATCA
TGGGTCAAATGGGTGAGAAAGGAAAAAAGGGTGATAAAGGTGACGCAGGAGTAGATGGTA
GACCTGGTATGCATGGAAACCACGGAGTAGACGGGAGAACAGGTGATAAAGGTGATAAAG
GAGCACCAGGGCTGGCGGGACTTCCAGCAAGCTTGGCTTCAATTTTGGACGAAGAAATGG
ACGAATTGACAAAAGCGGCAATCATTGAGAAATTCAGAGGGTTCAAAGGGGAACACGGCG
ACAAGGGTGATAAGGGCAGCAAAGGTGATCAAGGGAATACTGGTCTAGCAGGGGAACCCG
GTAAAGATGGTAGAACTGGAAGCACGGGGCCTCGAGGACCTACAGGTCCCCGAGGAAAAC
AAGGTCCTATGGGCCCTAGAGGATACAAAGGCGCAAGAGGTGCACCAGGACCAGTTGGAA
AAGTACCAGCTTCAGAAATAGCTTTACTAAAGGGTGCTACAGGACCTCCAGGACCAAAAG
GAAGTACTGGAGAAAAAGGTCAAAAAGGCGATAAAGCCCCGGAAATAGACGTATCAAAGC
TGAAAGGTGAAAAGGGGGATCGAGGGCTAGAAGGTAGTCCCGGTAAGCCTGGCCCCATAG
GACCAGTTGGCCCTCCAGGAATTTGTGAGAAGTCGAGTCCTCAACCACCCATCCCTGGAC
CTCCTGGACCCCCAGGGCCTCCAGGATCACCTGGGAGAGACGGTGAAGCGGGTCAACCAG
GAGCGTCCATAATCGGTCCGAAAGGTGAACCAGGATTTACGATGACATCGAATAATATTG
ATGAAACAGTTGATTTCGATAGCAACGACGATGAAGCCTTCTTTAAATCATACACGATTA
TTTTCAAGACCTACAAGGGTCTGTTGAAGAGAACATCGAAAACGCCTGTAGGAACTCTCG
CTTACGTTCTGGATGAACAAATTTTGTTGTTGAGAGTGGAATATGGATGGCAGAATGTTA
ATATTGGATCGATGTACCAACCTTCGAGAAGCGCACCTAGACTTGTACCATACAATCAAC
CGTCAAAGTCACCTAACGACAAAAGATATATACGCTTGGCAGCCCTGAACGAACCTTACT
CTGGTAGAATGGAGACCCACTTAAATAGGGTTGGCTACAGCGCGATCAACTACGAGTGCC
ACAGACAGTCCATGCGCGACTATAACGGAACATTCGTTGCTGTGCTCTCAAACAGGGTAA
CAGACCTAATTTCATTAGTAAAACCGTCAGAACGTAACATTCCTGTTACAAATTTAAAGG
GGGAAATTCTTTACCCTTCGTGGAGTAGCATATTTGATGGAGCCAGATCAATGCACGGGC
AATCTAAGGCTAATATCTACAGTTTCGACAACAGAAACGTCTATGTGGATCAACAATGGC
CTAAGAAAATGGTGTGGATAGGTGCTGATACTCTAGGCAATCGATCAACAAAAGCATACT
GTGACGAGTGGAGCTCAGATAGCCAACAAATGTTTGGCACCGCATCTCCTCTAGACAAAC
TTTTAGAACAAAGACTATTGAGCTGTGATAATAAACTTATAGTCCTTTGCGTCGAGTTAT
CGTCGCAAGCATCGAGACACAATCATAAGAAGCGCTGGCCCAAGAAACGTGTTACGTACG
ATAAACGAATCCGAAAACCGTTTGCTGGTACATAGTAAAAAGTTTTTAGTGTACAGACTT
CAACTTCTTGAGTAATACTCGTAATGTAACATGTGAGATTGATGTGCGCCATAGTATAAT
ATAACTTGAAATATGTGTGGTGTTGAAAATTTTGTGTATATGAAAGTTCAACATTTATTT
CTGTGAATTGTTTGTGTCATCTTATCACGTAACGCGGGACTGTCGTATCCGCCTTTCCTG
TATTTGAAACAAAATGGACGGCTGTCAATCTGACAGATGGATGTGTCAAACGAATGTCAT
TGTGTCAGTGTGATAATGAGCATCCATTACAGTTATTACCTAATTATAATACGGGTTTTA
TCAATTGATTTAGCACCTTTAGAATTGAAGCTAAACGACCGACCGACCTAAAAACATAGA
TTCTATCATCTTATAAAAAATATTCAATCTGTTTTAGTCTAGAAAAGGACAAATGTACTC
TTTCCGTCTCTTTTAAATCAAGCGCTTACTCTATAGTAACGTAATCGAAAAACTAAAAAG
TGACAATTCTTCGATTACATTTTTGGCGTTTATAAAAAAATAAGAACTTTAAATTAAGCC
ATTTCAATTCTAAAGGTGCGAATTATGTATTAAAGTTAAATAAATCTATGTCTGTATTAT
ACACTGCATTTCTAGTAAATTTTCAATTGTACTCTTTTTGGATAATAACGAATAATGTAT
TTTTAAATTATTATAATTAAGAACAGTTAGTTACGATTCTTATCTTTTAAATAAATTAAG
TTTTTATTGTACCTATTCAAATTTCCACACTTTTGGTATTATATAAATTATTATTTTATT
ATTAAAATTAATTAGGTTATAGTATGGCATATATTATAGTATGGTATCGTAAATTGTTTT
TAGTTTTCGTAAGTTTATATTTCAATTTCAATTATGTCCTATCAAATTAGTAAAGTGAAT
CAACAGTTTTGACAGACCTATACAAAAATAAACATGATTTTGATTATTATAGAGGAGGAT
AATAGTGTTATTGTAAGATATTTCAAAAATATGTTCCAAGCTTTTGTTTGTATTTCTGGC
GACTCACGGTAAAAGCGAGTACTTTCACGGGACGATCACACTATCAAACTGAAATAAAGC
GGGAAACTTAGCCTAATTTTATACATTTCATTGACGTGTATAAAATTAGGCTAAGTGGCT
TATCTTGTATTAAGTGATTACCAGAGAACACGTGATAAATGGCCGTATCCACGTTTAGAT
ATGATGCCCCATTACTGAATGACTTGATGGTGCGGTAGTTAGCGACTCTGACTGTCACAC
CGAGGGTCGTGGGATCGATTCCCACATCGAGCAAACATTTTGCGATAAACAGATTTATTT
ATGGATATGTTTAAGCATATCTAAGTATGTTTAGCAGTCTCTCGTAGGCATAACCCAGGG
AATCCTAAATTGGAGCAGGATGACCGGAGCGTGATTTGTTCCCAGTTATTATTATTATTA
TTAATTACTTAAATAACCTATGTGCCTATTATTCTTTTTATTTATTGCAT
(4730 bp)

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