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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13449_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:21.76 TPM:21.88
ORF EntryO_BomoSK14079_complete:A_BomoSK_comp13449_c0_seq1
Sequence
(Nucleotide)
CACGCTCTCGTTAGTAACACATGCGCCGGCGCCTCGCGTGCCCAGAAGCGAAACTTCGAT
ACAATAAAAAAATATTTGCTGAGCGATAATGTGATAAATATGAGTGTACTGATTGAACGT
TTTTGGTGCTGTGGTTTTGAATAATTGTATTTAGCGTGGTGTGTAGATTTTGAATTCGGA
ACGGCAGTATGGCGGGAATTTTGTACACTTTATTTTCTATACTACTCTTCCAAAGAGCAA
TTTCCAGTTACTTGTCTGGTGGTTACAACTTACTGAGACTGGACCAATTACCTTCCGACA
TACCGACAACCGTAGCACCCGACGGCTTTCCGGCTCCAAATTTCGCAAATCAATCCGTCA
CAATACCAATAAGCGACATCATCGAAATCGGGGATTATCTACCAACACCGTTTATTATCA
ACGCAGTGATCAAATTGGACGAACTAACAGCGACATGCTTATTCCAGTTTAAGAATAACG
TTGCTGACACGTACTTCAGTTTGTGTATGGAGCCCGCCAGCGAGTCTCTAGTGAGATTTA
TCTTCAACGGCCTCGATACGAGCCCTATAGAAACCGTAGTGAAAGTAGACAAAGATTCAT
GGACAAAATACACTTTTGAAATCGATCGCACCTCGTTGACCACTCGTTTGGACTGTATAC
TCTTATTTAAGCAGAGCACCGAGAGACCTACTATGGATGTTTTATTCGAACCGGATTCGA
CGTTGGTTTTGGGAGAGTCGCCTTACAGTGAAAAGAATTTTATGGGATCCATAAAGGAAA
TAAAAATATATCCGGACTCAAACGAAGAAACCATAAAAAATATTTGCAACGAGTTTAATG
AAGAAAACGAAGAGTCAACGGACAATGTAGAAGAACCTCAATATATTAAAAACCCGGAGA
AAGGTGAGAAAGGTGACAAAGGTGAGAAGGGTGAAAAAGGACAAAAAGGACACCAATGTC
TCAAAGGAGAGCCTGGAAATTCCGTCATCGGTCCAGAAGGATCACAAGGACCTGTTGGGC
CGCTAGGACCCCCTGGCCCCGTAGGAAAGCGAGGACCGAAAGGGGAGTGTGAGTGCTCGC
CTAATTTGGTATCGACTCTTTTGGAAACAATGCCTGAAATGAGAGGACCTCCCGGTGAAG
CTGGTCCCAGGGGCGAGCCTGGACTTCCTGGTCTTCATGGGGAGAAAGGCCCTGAAGGTC
CTGCGGGGAAACCTGGCCTAGACGGTAGAGTAGGGGAGCCAGGTCACGATGGTGTACCTG
GACGAAACGGAAAGCCTGGGGAGCCAGGACCACCAGGAAAAGACGGAGCACCCGGTCGTG
ATGGAGAACCTGGACTAAGAGGCCCACCTGGCCCACCCGGTCCTGGTTTCATGGAAACAG
AGGAAGAAAAGAAGGCTCGACAGATTCGGATACCTGGGCCTAAAGGTGAGCAAGGCTCAC
CTGGCTTACCAGGGTATCCCGGGCCAAAAGGTGAAACCGGATCAAAAGGTGACAAAGGAG
AAATTGGACAACAAGGTGCAAAAGGAGAAGAAGGTATCATGGGTCAAATGGGTGAGAAAG
GAAAAAAGGGTGATAAAGGTGACGCAGGAGTAGATGGTAGACCTGGTATGCATGGAAACC
ACGGAGTAGACGGGAGAACAGGTGATAAAGGTGATAAAGGAGCACCAGGGCTGGCGGGAC
TTCCAGCAAGCTTGGCTTCAATTTTGGACGAAGAAATGGACGAATTGACAAAAGCGGCAA
TCATTGAGAAATTCAGAGGGTTCAAAGGGGAACACGGCGACAAGGGTGATAAGGGCAGCA
AAGGTGATCAAGGGAATACTGGTCTAGCAGGGGAACCCGGTAAAGATGGTAGAACTGGAA
GCACGGGGCCTCGAGGACCTACAGGTCCCCGAGGAAAACAAGGTCCTATGGGCCCTAGAG
GATACAAAGGCGCAAGAGGTGCACCAGGACCAGTTGGAAAAGTACCAGCTTCAGAAATAG
CTTTACTAAAGGGTGCTACAGGACCTCCAGGACCAAAAGGAAGTACTGGAGAAAAAGGTC
AAAAAGGCGATAAAGCCCCGGAAATAGACGTATCAAAGCTGAAAGGTGAAAAGGGGGATC
GAGGGCTAGAAGGTAGTCCCGGTAAGCCTGGCCCCATAGGACCAGTTGGCCCTCCAGGAA
TTTGTGAGAAGTCGAGTCCTCAACCACCCATCCCTGGACCTCCTGGACCCCCAGGGCCTC
CAGGATCACCTGGGAGAGACGGTGAAGCGGGTCAACCAGGAGCGTCCATAATCGGTCCGA
AAGGTGAACCAGGATTTACGATGACATCGAATAATATTGATGAAACAGTTGATTTCGATA
GCAACGACGATGAAGCCTTCTTTAAATCATACACGATTATTTTCAAGACCTACAAGGGTC
TGTTGAAGAGAACATCGAAAACGCCTGTAGGAACTCTCGCTTACGTTCTGGATGAACAAA
TTTTGTTGTTGAGAGTGGAATATGGATGGCAGAATGTTAATATTGGATCGATGTACCAAC
CTTCGAGAAGCGCACCTAGACTTGTACCATACAATCAACCGTCAAAGTCACCTAACGACA
AAAGATATATACGCTTGGCAGCCCTGAACGAACCTTACTCTGGTAGAATGGAGACCCACT
TAAATAGGGTTGGCTACAGCGCGATCAACTACGAGTGCCACAGACAGTCCATGCGCGACT
ATAACGGAACATTCGTTGCTGTGCTCTCAAACAGGGTAACAGACCTAATTTCATTAGTAA
AACCGTCAGAACGTAACATTCCTGTTACAAATTTAAAGGGGGAAATTCTTTACCCTTCGT
GGAGTAGCATATTTGATGGAGCCAGATCAATGCACGGGCAATCTAAGGCTAATATCTACA
GTTTCGACAACAGAAACGTCTATGTGGATCAACAATGGCCTAAGAAAATGGTGTGGATAG
GTGCTGATACTCTAGGCAATCGATCAACAAAAGCATACTGTGACGAGTGGAGCTCAGATA
GCCAACAAATGTTTGGCACCGCATCTCCTCTAGACAAACTTTTAGAACAAAGACTATTGA
GCTGTGATAATAAACTTATAGTCCTTTGCGTCGAGTTATCGTCGCAAGCATCGAGACACA
ATCATAAGAAGCGCTGGCCCAAGAAACGTGTTACGTACGATAAACGAATCCGAAAACCGT
TTGCTGGTACATAGTAAAAAGTTTTTAGTGTACAGACTTCAACTTCTTGAGTAATACTCG
TAATGTAACATGTGAGATTGATGTGCGCCATAGTATAATATAACTTGAAATATGTGTGGT
GTTGAAAATTTTGTGTATATGAAAGTTCAACATTTATTTCTGTGAATTGTTTGTGTCATC
TTATCACGTAACGCGGGACTGTCGTATCCGCCTTTCCTGTATTTGAAACAAAATGGACGG
CTGTCAATCTGACAGATGGATGTGTCAAACGAATGTCATTGTGTCAGTGTGATAATGAGC
ATCCATTACAGTTATTACCTAATTATAATACGGGTTTTATCAATTGATTTAGCACCTTTA
GAATTGAAGCTAAACGACCGACCGACCTAAAAACATAGATTCTATCATCTTATAAAAAAT
ATTCAATCTGTTTTAGTCTAGAAAAGGACAAATGTACTCTTTCCGTCTCTTTTAAATCAA
GCGCTTACTCTATAGTAACGTAATCGAAAAACTAAAAAGTGACAATTCTTCGATTACATT
TTTGGCGTTTATAAAAAAATAAGAACTTTAAATTAAGCCATTTCAATTCTAAAGGTGCGA
ATTATGTATTAAAGTTAAATAAATCTATGTCTGTATTATACACTGCATTTCTAGTAAATT
TTCAATTGTACTCTTTTTGGATAATAACGAATAATGTATTTTTAAATTATTATAATTAAG
AACAGTTAGTTACGATTCTTATCTTTTAAATAAATTAAGTTTTTATTGTACCTATTCAAA
TTTCCACACTTTTGGTATTATATAAATTATTATTTTATTATTAAAATTAATTAGGTTATA
GTATGGCATATATTATAGTATGGTATCGTAAATTGTTTTTAGTTTTCGTAAGTTTATATT
TCAATTTCAATTATGTCCTATCAAATTAGTAAAGTGAATCAACAGTTTTGACAGACCTAT
ACAAAAATAAACATGATTTTGATTATTATAGAGGAGGATAATAGTGTTATTGTAAGATAT
TTCAAAAATATGTTCCAAGCTTTTGTTTGTATTTCTGGCGACTCACGGTAAAAGCGAGTA
CTTTCACGGGACGATCACACTATCAAACTGAAATAAAGCGGGAAACTTAGCCTAATTTTA
TACATTTCATTGACGTGTATAAAATTAGGCTAAGTGGCTTATCTTGTATTAAGTGATTAC
CAGAGAACACGTGATAAATGGCCGTATCCACGTTTAGATATGATGCCCCATTACTGAATG
ACTTGATGGTGCGGTAGTTAGCGACTCTGACTGTCACACCGAGGGTCGTGGGATCGATTC
CCACATCGAGCAAACATTTTGCGATAAACAGATTTATTTATGGATATGTTTAAGCATATC
TAAGTATGTTTAGCAGTCTCTCGTAGGCATAACCCAGGGAATCCTAAATTGGAGCAGGAT
GACCGGAGCGTGATTTGTTCCCAGTTATTATTATTATTATTAATTACTTAAATAACCTAT
GTGCCTATTATTCTTTTTATTTATTGCAT
(4709 bp)

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