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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13425_c0_seq2
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		PREDICTED:_transcription_initiation_factor_TFIID_subunit_1_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0008134 F transcription factor binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046425 P regulation of receptor signaling pathway via JAK-STAT
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0051726 P regulation of cell cycle
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
Transcript
Level		FPKM:0.53 TPM:0.54
ORF EntryO_BomoSK13989_complete:A_BomoSK_comp13425_c0_seq2
Sequence
(Nucleotide)
GGAAGATGATGTTATATGGGATAGAAGAAATTAGAGACACTGTGGAGAGTGCAGATAGCC
CTGATAGTGGCTTTCCCGATGATTCTTTCCTTATGCTGTCACAGTTGCAGTGGGAAGATG
ATGTTATATGGGATGGAAGTGAAATGAAACATAAGGTGCTTGCCCGTTTGAACAGCAAAA
GTAATGCAGCCGGATGGGTTCCTACATCAGTAAGCCGCACTGCACAGCAATTCTCACATC
CTAGACCACAGCCACCAACCACATTACAGACTAAAACACCCGCTGCTACAGCCACTTCTG
CTAATAACCAACCTGGAGGGAATTCAGCTGATGGTGAAGATAACACTTGGTACAGTATAT
TCCCAGTTGAAAACGAAGAGTTGGTATACGGTACTTGGGAGGATGAAGTTATATGGGATG
CAGAGAACATGTCCAAAATACCGAAACCTAAGATACTTACATTGGATCCTAACGATGAGA
ACATTATATTGGGTATTCCAGATGATGTCGATCCTTCGAAGATTACTAGAGAGCGAGGTC
CAGCTCCTAAAGTAAAGATACCTCATCCTCACGTTAAGAAATCCAAGATCCTGCTTGGAA
AAGCTGGTGTAATTAATGTACTTCAAGAAGACGCTCCACCGCCTCCCCCTAAGTCGCCTG
ACAGAGATCCTTTCAATATATCGAATGATGTATATTACCAGCCAAAATCGCAGAACCCAC
GTTTGAAAGTGGGCGGCGGTCAGCTGATACAGCACAGCACGCCGGTGGTGGAGCTGCGCG
CGCCCTTCATCCAGACGCACATGGGGCCGGCCCGACTGCGCGCGTTCCACCGGCCCGCGC
TCAGGAAGCTGACGTACGGGCCGCTCTCTGCCCCCGGACCGCACCCCGTCCAACCCTTGC
TGAAGCATATTCGAAAGAAAGCTAAGCAACGTGAAGCAGAAAGACTAGCGTCTGGTGGCG
GTGACGTGTTCTTCATGCGGACGCCGGAAGATCTGAGCGGTAGAGACGGTGAAATAATAC
TGGTCGAGTTCTGCGAAGAGCATCCGCCACTGTTGAGTCAAGTTGGCATGTGCACTAAGA
TCAAAAATTACTACAAGCGGACAGCTACCAAGGACAACGGTCCCAAGCCACTGAAGTACG
GTGAAGTAGCGTACGCTCACACGTCGCCGTTCCTCGGGATCCTGGCGCCGGGAGCCACGC
AGCCGGTCGTCGAGAACAACATGTACAGAGCTCCTATATACGAACACACGTTGCCGCAGA
CTGACTTCATCATTATACGTACCAGACAAGCATATTATATACGTGAGATCGACGCTGTGT
ACGTTGCCGGACAAGAGTGTCCGCTGTATGAAGTCCCCGGACCAAATTCAAAGAGAGCTA
ACAATTTCGTTAGAGATTTCTTGCAGGTGTTCATATACAGGCTATTTTGGAAATCTCGTG
ACAAGCCACGTCGTATAAAAATGGATGATATAAAGAGGGCGTTCCCGTCGCATTCTGAAA
GTTCGATTAGAAAGAGATTGAAGCTATGCGCTGATTTTAAGCGTACCGGATTGGATTCGA
ATTGGTGGGTGATAAAGCCGGATTTCCGTCTACCCTCCGAAGAAGAAATCCGAGCCATGG
TGTCGCCCGAACAGTGCTGCGCCTACTTCAGTATGGCGGCCGCAGAACAAAGACTGAAAG
ACGCTGGCTACGGAGAAAAGTTCCTGTTTACCCCGCAAGAGGACGATGACGAGGAAATGC
AGCTGAAGATAGATGATGAAGTAAAAGTGGCTCCGTGGAACACGACCCGCGCCTACATCC
AGGCCATGCGCGGCAAGTGTCTGCTCCAGCTGACCGGCCCGGCGGACCCCACCGGCTGCG
GCGAGGGGTTCTCGTACGTGCGGGTGCCGAACAAGCCCACGCAGCAACCGAACGAGGAGC
AACAACCCAAACGAACCGTCACCGGGACCGACGCTGACCTGAGGAGGCTGAGTTTGAACA
ACGCTAAGGCACTGTTGAGGAAGTTCGGTGTTCCCGAAGAGGAGATCAAAAAGCTGTCGC
GCTGGGAAGTAATCGATGTTGTACGAACATTATCGACCGAGAAAGCAAAAGCTGGCGAGG
AAGGCATGACGAAGTTCTCCAGAGGAAATAGATTCTCTATTGCAGAGCATCAAGAAAGGT
ACAAAGAAGAATGTCAGCGTATATTCGAGCTCCAGAACCGCGTCCTGCAGAGTACAGAGG
TGCTAAGTACCGACGAGGCCGAGAGTTCGGTCAGCGAGGAATCCGACTTGGAAGAAATGG
GCAAGAATCTCGAAAATATGCTAGCAAATAAAAAGACCACAGAACAGCTGTCAATGGAAA
GAGAGGAGGCAGAGAGAGCGGAACTTCGGAAGATGATAATGGGACAGTCCGAGAAGAAAC
CGCAAATTAATCCAAGCGATCAACAACAAACATCGAGTCAAGCAGGTCGAGTGCTCCGCA
TAGTGCGCACGTTCCGCGACGCTTCCGGCCAGCGGTACACGCGCGTCGAGCTCGTGCGGA
AGGCGGCCGTCATAGAGGCCTACACCAAGATACGGTCCACCAAGGACGACATGTTCATAC
GGCAGTTCGCCTCTATGGATGAAACGCAGAAAGAAGAAATGAAGAGGGAGAAGAGAAGAA
TACAGGAACAATTGAGACGTATCAAGCGAAATCAGGAGAGAGAAAGACTGGCCGGCAATG
TCACCGTACCTGGCCTTGGGAACGACAGTGACCTCGGGCCCTCCTCCAGCAACCTCATAC
CTCTGGGCCAAATCAAACAAGAGCCGGATCTCCACACGCCATCCCGAAGACGTGCCAAAC
TAAAGCCTGACTTGAAACTAAAGTGTGGCGCCTGCGGCCAGGTTGGTCACATGAGGACGA
ACAAAGCGTGTCCGCTATACACCGGCTCGGTTACGGGTGGACCGGCCTCTCCTCCGGACA
TAGACGTGGAGCCTCCTCCCGTTGAACCAGAAGATGATGATCTTGGATATGTGGATGGAA
CAAAGCTAACGCTACCAACCAAGATTATTAAGCAAACCGCCGAGGAGCTGAAGCGTCGCG
GCGGCGGCAGGCGCGGCAGCGAGTTCGGACGCAGCAAACGCCGCGGCGCCACCGCGGACT
CGTGCGAGTACTTGGTCCGGCGGCCGGCCGAGAGGCGCCGCACCGATCCGCTGGTCACCC
TGTCGTCGTTGCTGGAAGACGTCCTAAATCACATGCGGCATTTGCCCGATGTACAGCCCT
TCCTGTTTCCTGTCAATCATAAGCTTGTTGCAGATTACTATCGCATAGTTTCCCGACCGA
TGGATCTGCAAACTATACGAGATAATCTCCGACAGAAACATTATCAAAGCCGCGAAGAAT
TCTTGGCCGATGTCAATCAGATCGTCGAGAACAGCACGCTTTATAATGGTCCAACAAGCA
GTCTCACTGTGGCCGCCCAGAGAATGTTACAGCGCTGCGTTGAGAAATTAGCAGAAAAAG
AGGAACAGCTAATGAAACTCGAGAAACAAATTAATCCATTACTTGATGATAACGATCAGG
TGGCCTTGTCGTTTATATTCGAGAATCTTCTGACAACTAAACTGAAGATAATGCCCGAAT
CGTGGCCCTTCTTGAAGCCCGTCAACAAGAAACAAGTTAAAGACTATTACAACGTCATCA
AGCAACCTATAGACATGGAAACTATGGGAAAGAAGATTCAAGCTCACAAATATCACAGCC
GTGAAGAATTCCTCCGGGACGTACAACTTTTGGTGGATAATTGTCGGGCTTACAACGGCC
CGAACTCTCAGTTCACGAGACAAGCTGAGGCCGTATTGAAGGTCACGCAGGACGCTTTAG
GCCAGTTCGACGAGCATGTAAGTCAGTTGGAAGCGAACATAGTTAGGGTTCAGCAGAAAA
TGCTCGAAGACGCCCAGCACTCGGAGCCGGAGGGCGACGACCTCCCCCCCACGGACGAGA
AGCGCGGCCGGGGGCGCCCGCGGAAACACAAGCCCTCAACATCAGACGGTGCTACTCCTA
GAAAACGAGGCAGACCACGTAAAGATCAGAACAGTTTGGAAGAAGATCTTCAATACTCGG
ACAGTGGTAGTTCGGAATTGGAAGAGGTGGAACAGAAAGACATCGTTGACACCATTCAAC
TCTGTGTCAAGCCAGAAGATACAACGCTGGACGAGCCGAGCATGATATCGGATCCGTCCG
ATTTCCCGACGACGATCAAACGAGAAGTGACGGACGACCTGCCTCCGCCTTCGGACGACT
TCGTGGACCTCGATCAGCCGACTGACTTTACTTTCCCGTCCATCGTAAAGGAAGAGCCGA
TCGAACCTGACATGAACATGGTTCCCGCGATGATAGAGAGTCACATGGAGCCGCCTCAGC
AGTTCAAGGAGGAGCCGCCAGAGAATTGGCAGCCCGATCCAGCCATTCAAGATGATCTCC
AGGTGACTGATAGCGAGGAAGAAGCAGAAGATGGGTTGTGGTTCTAAGCGGTAAAGATGG
TGGTGATGAGAAAAGATAAACGTTTTCGAGAAATTTCCTCGAAAGTCTTCAAACAGTAAA
CATTTAAATGGAGTTGGAGAGTGGAGTAAACGTTAGGCAGCGGCTTGGCTCTGCGCTGGC
ATTGCTGAAGTCCATGGGC
(4639 bp)

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