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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13425_c0_seq1
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		hypothetical_protein_KGM_10653_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0008134 F transcription factor binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046425 P regulation of receptor signaling pathway via JAK-STAT
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0051726 P regulation of cell cycle
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
Transcript
Level		FPKM:5.23 TPM:5.26
ORF EntryO_BomoSK13984_complete:A_BomoSK_comp13425_c0_seq1
Sequence
(Nucleotide)
CGAGGCAAACAGCAAACACTCATAAATAAAGAATAATACCATTTGAAACAAAAAAATTGC
AATGCAACTTGAGTAGCCTTATTAAACATTATACATATCTTAATTAAACTAATATTATGA
ACTTGGAAATGTAATTGTATTGTACTTCTTCGAACCATGTGTGATAGTGACGAACAAGGT
GACCACAGCCGTTCAGGCTTGGATCTGACCGGGTTCTTGTTTGGTAATATTGACGAAAGG
GGTCAGTTAGAAGATGATGGATTGCTAGATGGTGAATCGAAGCGAATGTTATCATCGCTT
AGCCGCTTAGGTTTAGGGTCTATGCTCTCTGAAGTCCTGGAGGTTGAGGAACCAGTTAAA
GAAGAGGAAGAAAAAGACTATAATGAGAAAAGTCCATCGGCTGTGGACTTTTTTGACATT
GAAGATGCAGCAGAGGATATAAAAGTAGAAAATAATGTGATAAAATTTGAAAATACTTCA
GATGTACAAACTGTGCATAGCAGCAATGTTCCTGTGATTATTGATTCACAGAGTATTAAA
GAGGAATTAAAAGAAGATACTTGGAGGGACACTGATATTGCAGGAGAACAAGAGGTACAG
AGTACCAATGATGATGGCTATGAAGGTGATATGGAAGGTGATGGTGGACTTATGCCCCCT
CCTTCGACAGTTCCACCCCCCAAACAAGAAAAACCCAAAAAACTAGATACTCCATTGGCT
GCAATGCTTCCATCTAAATATGCCAATGTTGATGTCACAGAACTGTTTCCGGATTTCAGA
CCAGATAGAGTACTTCTTTTCTCTCGACTTTTTGGACCTGGAAAACTGTCCAGCTTACCG
CAAATATGGCGCGGTGTTAAAAAACGTAGACGTCGAAAGCGCAGTGGAAGTACAGGCAGT
GACACACCACCGATGGTTCCAGACAGTCAGGAACCTCAATATGCAAGTGACGATGAAGAG
AAACTTCTCAAGCCTATGGAAGAAAATCAACAGATGTCTAATGACGATAAGGGATTAGGC
TCAGGAGACAAAGCACAAAGGCCAACACCGGCCCACTGGCGTTTTGGTCCTGCTCAAGTT
TGGTATGATATGTTGAATGTACCAGAGACAGGTGATGGGTTTGACTACGGATTCAAATTA
AAGACTCAAGGAACAGATCGTGAAGAAAAATCAAAGGAAGTTGAAGAAGAAATTAGAGAC
ACTGTGGAGAGTGCAGATAGCCCTGATAGTGGCTTTCCCGATGATTCTTTCCTTATGCTG
TCACAGTTGCAGTGGGAAGATGATGTTATATGGGATGGAAGTGAAATGAAACATAAGGTG
CTTGCCCGTTTGAACAGCAAAAGTAATGCAGCCGGATGGGTTCCTACATCAGTAAGCCGC
ACTGCACAGCAATTCTCACATCCTAGACCACAGCCACCAACCACATTACAGACTAAAACA
CCCGCTGCTACAGCCACTTCTGCTAATAACCAACCTGGAGGGAATTCAGCTGATGGTGAA
GATAACACTTGGTACAGTATATTCCCAGTTGAAAACGAAGAGTTGGTATACGGTACTTGG
GAGGATGAAGTTATATGGGATGCAGAGAACATGTCCAAAATACCGAAACCTAAGATACTT
ACATTGGATCCTAACGATGAGAACATTATATTGGGTATTCCAGATGATGTCGATCCTTCG
AAGATTACTAGAGAGCGAGGTCCAGCTCCTAAAGTAAAGATACCTCATCCTCACGTTAAG
AAATCCAAGATCCTGCTTGGAAAAGCTGGTGTAATTAATGTACTTCAAGAAGACGCTCCA
CCGCCTCCCCCTAAGTCGCCTGACAGAGATCCTTTCAATATATCGAATGATGTATATTAC
CAGCCAAAATCGCAGAACCCACGTTTGAAAGTGGGCGGCGGTCAGCTGATACAGCACAGC
ACGCCGGTGGTGGAGCTGCGCGCGCCCTTCATCCAGACGCACATGGGGCCGGCCCGACTG
CGCGCGTTCCACCGGCCCGCGCTCAGGAAGCTGACGTACGGGCCGCTCTCTGCCCCCGGA
CCGCACCCCGTCCAACCCTTGCTGAAGCATATTCGAAAGAAAGCTAAGCAACGTGAAGCA
GAAAGACTAGCGTCTGGTGGCGGTGACGTGTTCTTCATGCGGACGCCGGAAGATCTGAGC
GGTAGAGACGGTGAAATAATACTGGTCGAGTTCTGCGAAGAGCATCCGCCACTGTTGAGT
CAAGTTGGCATGTGCACTAAGATCAAAAATTACTACAAGCGGACAGCTACCAAGGACAAC
GGTCCCAAGCCACTGAAGTACGGTGAAGTAGCGTACGCTCACACGTCGCCGTTCCTCGGG
ATCCTGGCGCCGGGAGCCACGCAGCCGGTCGTCGAGAACAACATGTACAGAGCTCCTATA
TACGAACACACGTTGCCGCAGACTGACTTCATCATTATACGTACCAGACAAGCATATTAT
ATACGTGAGATCGACGCTGTGTACGTTGCCGGACAAGAGTGTCCGCTGTATGAAGTCCCC
GGACCAAATTCAAAGAGAGCTAACAATTTCGTTAGAGATTTCTTGCAGGTGTTCATATAC
AGGCTATTTTGGAAATCTCGTGACAAGCCACGTCGTATAAAAATGGATGATATAAAGAGG
GCGTTCCCGTCGCATTCTGAAAGTTCGATTAGAAAGAGATTGAAGCTATGCGCTGATTTT
AAGCGTACCGGATTGGATTCGAATTGGTGGGTGATAAAGCCGGATTTCCGTCTACCCTCC
GAAGAAGAAATCCGAGCCATGGTGTCGCCCGAACAGTGCTGCGCCTACTTCAGTATGGCG
GCCGCAGAACAAAGACTGAAAGACGCTGGCTACGGAGAAAAGTTCCTGTTTACCCCGCAA
GAGGACGATGACGAGGAAATGCAGCTGAAGATAGATGATGAAGTAAAAGTGGCTCCGTGG
AACACGACCCGCGCCTACATCCAGGCCATGCGCGGCAAGTGTCTGCTCCAGCTGACCGGC
CCGGCGGACCCCACCGGCTGCGGCGAGGGGTTCTCGTACGTGCGGGTGCCGAACAAGCCC
ACGCAGCAACCGAACGAGGAGCAACAACCCAAACGAACCGTCACCGGGACCGACGCTGAC
CTGAGGAGGCTGAGTTTGAACAACGCTAAGGCACTGTTGAGGAAGTTCGGTGTTCCCGAA
GAGGAGATCAAAAAGCTGTCGCGCTGGGAAGTAATCGATGTTGTACGAACATTATCGACC
GAGAAAGCAAAAGCTGGCGAGGAAGGCATGACGAAGTTCTCCAGAGGAAATAGATTCTCT
ATTGCAGAGCATCAAGAAAGGTACAAAGAAGAATGTCAGCGTATATTCGAGCTCCAGAAC
CGCGTCCTGCAGAGTACAGAGGTGCTAAGTACCGACGAGGCCGAGAGTTCGGTCAGCGAG
GAATCCGACTTGGAAGAAATGGGCAAGAATCTCGAAAATATGCTAGCAAATAAAAAGACC
ACAGAACAGCTGTCAATGGAAAGAGAGGAGGCAGAGAGAGCGGAACTTCGGAAGATGATA
ATGGGACAGTCCGAGAAGAAACCGCAAATTAATCCAAGCGATCAACAACAAACATCGAGT
CAAGCAGGTCGAGTGCTCCGCATAGTGCGCACGTTCCGCGACGCTTCCGGCCAGCGGTAC
ACGCGCGTCGAGCTCGTGCGGAAGGCGGCCGTCATAGAGGCCTACACCAAGATACGGTCC
ACCAAGGACGACATGTTCATACGGCAGTTCGCCTCTATGGATGAAACGCAGAAAGAAGAA
ATGAAGAGGGAGAAGAGAAGAATACAGGAACAATTGAGACGTATCAAGCGAAATCAGGAG
AGAGAAAGACTGGCCGGCAATGTCACCGTACCTGGCCTTGGGAACGACAGTGACCTCGGG
CCCTCCTCCAGCAACCTCATACCTCTGGGCCAAATCAAACAAGAGCCGGATCTCCACACG
CCATCCCGAAGACGTGCCAAACTAAAGCCTGACTTGAAACTAAAGTGTGGCGCCTGCGGC
CAGGTTGGTCACATGAGGACGAACAAAGCGTGTCCGCTATACACCGGCTCGGTTACGGGT
GGACCGGCCTCTCCTCCGGACATAGACGTGGAGCCTCCTCCCGTTGAACCAGAAGATGAT
GATCTTGGATATGTGGATGGAACAAAGCTAACGCTACCAACCAAGATTATTAAGCAAACC
GCCGAGGAGCTGAAGCGTCGCGGCGGCGGCAGGCGCGGCAGCGAGTTCGGACGCAGCAAA
CGCCGCGGCGCCACCGCGGACTCGTGCGAGTACTTGGTCCGGCGGCCGGCCGAGAGGCGC
CGCACCGATCCGCTGGTCACCCTGTCGTCGTTGCTGGAAGACGTCCTAAATCACATGCGG
CATTTGCCCGATGTACAGCCCTTCCTGTTTCCTGTCAATCATAAGCTTGTTGCAGATTAC
TATCGCATAGTTTCCCGACCGATGGATCTGCAAACTATACGAGATAATCTCCGACAGAAA
CATTATCAAAGCCGCGAAGAATTCTTGGCCGATGTCAATCAGATCGTCGAGAACAGCACG
CTTTATAATGGTCCAACAAGCAGTCTCACTGTGGCCGCCCAGAGAATGTTACAGCGCTGC
GTTGAGAAATTAGCAGAAAAAGAGGAACAGCTAATGAAACTCGAGAAACAAATTAATCCA
TTACTTGATGATAACGATCAGGTGGCCTTGTCGTTTATATTCGAGAATCTTCTGACAACT
AAACTGAAGATAATGCCCGAATCGTGGCCCTTCTTGAAGCCCGTCAACAAGAAACAAGTT
AAAGACTATTACAACGTCATCAAGCAACCTATAGACATGGAAACTATGGGAAAGAAGATT
CAAGCTCACAAATATCACAGCCGTGAAGAATTCCTCCGGGACGTACAACTTTTGGTGGAT
AATTGTCGGGCTTACAACGGCCCGAACTCTCAGTTCACGAGACAAGCTGAGGCCGTATTG
AAGGTCACGCAGGACGCTTTAGGCCAGTTCGACGAGCATGTAAGTCAGTTGGAAGCGAAC
ATAGTTAGGGTTCAGCAGAAAATGCTCGAAGACGCCCAGCACTCGGAGCCGGAGGGCGAC
GACCTCCCCCCCACGGACGAGAAGCGCGGCCGGGGGCGCCCGCGGAAACACAAGCCCTCA
ACATCAGACGGTGCTACTCCTAGAAAACGAGGCAGACCACGTAAAGATCAGAACAGTTTG
GAAGAAGATCTTCAATACTCGGACAGTGGTAGTTCGGAATTGGAAGAGGTGGAACAGAAA
GACATCGTTGACACCATTCAACTCTGTGTCAAGCCAGAAGATACAACGCTGGACGAGCCG
AGCATGATATCGGATCCGTCCGATTTCCCGACGACGATCAAACGAGAAGTGACGGACGAC
CTGCCTCCGCCTTCGGACGACTTCGTGGACCTCGATCAGCCGACTGACTTTACTTTCCCG
TCCATCGTAAAGGAAGAGCCGATCGAACCTGACATGAACATGGTTCCCGCGATGATAGAG
AGTCACATGGAGCCGCCTCAGCAGTTCAAGGAGGAGCCGCCAGAGAATTGGCAGCCCGAT
CCAGCCATTCAAGATGATCTCCAGGTGACTGATAGCGAGGAAGAAGCAGAAGATGGGTTG
TGGTTCTAAGCGGTAAAGATGGTGGTGATGAGAAAAGATAAACGTTTTCGAGAAATTTCC
TCGAAAGTCTTCAAACAGTAAACATTTAAATGGAGTTGGAGAGTGGAGTAAACGTTAGGC
AGCGGCTTGGCTCTGCGCTGGCATTGCTGAAGTCCATGGGC
(5801 bp)

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