SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13413_c0_seq2
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_Su(dx)_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0016348 P imaginal disc-derived leg joint morphogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019904 F protein domain specific binding
GO:0019915 P lipid storage
GO:0031623 P receptor internalization
GO:0032880 P regulation of protein localization
GO:0035209 P pupal development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048190 P wing disc dorsal/ventral pattern formation
Transcript
Level		FPKM:7.68 TPM:7.73
ORF EntryO_BomoSK13959_complete:A_BomoSK_comp13413_c0_seq2
Sequence
(Nucleotide)
ATTAGAAATTACTAGGTATATTGGTTGAGATAAATTAATGGACATCATTAATATAATCGA
TCGACCGTGACAGGTGCGTGACATACTGTGACTAATTTCAGGGAATGTGAAAAATTATTT
ACTCAGGATATCATTTAATAAATTTAAAAAAATACTAAAATTTTCTGTATACATTCAGAT
TTTCGTGTACGTGTATTTATGTGCCTTCTGCGCTAGATTTCAATAAGTAATGTGATAAAG
AGAATGTGGCGTTATTTACGTTTCCTTTCACAGTGATAAGAATACGATAATAAGATAATT
CGAAGGATTCTTAGCTTCGGACGAACTCGCTTCATATGAAATGTCCAGTATTAAGATGAA
ACCACAGCCTAAATAAAACAATATTATGCTTCATTCAAAAGGTTTAACTAAGAGCATACA
CTATGAATGAAAATATATCTTCACTCACTGCTCCAATTTCTGTGTCCACATATCATCAAC
TGAGCTTAACAGTGGAATCAGCAAATATAAAAAATTCAGGCTTGTTCAAACCAAATCCAT
ACCTGCAAGTTATAATTGATGATAAAATATTGAGAAAGACTGAAGTTATAAGGAACACCT
TGCATCCAAAATGGAAAGAAGATCTTACTATTTTGGTGACGCCACAATCGCAATTACTGT
TCCGTCTTGCAGATTATCATAGCTTTAGGAAAGACAATGTGATTGGTGAAAAAAAAGTGA
ACCTATTAAAAGTTTTGTTTTACTGTAATGGGAAATGTGAGAATTTAGAACTTACATTAG
ATTTAATGAAAACATCTTCTCAAGAGAATACTAGTGGAAATGCTGAGGTAAAAACAGCAG
AACTGGTGTTGCTTCTAGATGGCTTAAGAATTGACCCTGGAGTGTTGACACAAACACGTG
AATTACTTGGTGAAACGGCAAATACTGCAGCTCCCCTTAATGAAGGGGTGCGAGCCAGAA
TCAGAATGCGCAACAATCCTGAGACTGTTAGATCCATGATGCGATCACTAACACTTGGAC
CACCTCCAGGACCTCCACCAATGAGCAATGGGTCTATACATTTACCGAGTACTGCAACAC
AGTCATCATCAGAAACTGCAGGCCCCTCACAGCAGTCACGCCTGCCTGGTACACAGGATC
CAACATCAACACAGCCAACATCTGCTAATACTGCTTACCCTAATGCTGCTGAGGAGCCTT
TGCCTCCTGGGTGGGAAATGAGATATGATGGTTATGGTAGACGGTACTATGTGGATCACA
ACACTCGGTCAACATCGTGGGAACGTCCACAACCGTTGCCGGCAGGTTGGGAGGTGCGGC
GCGACGCTCGTGGGCGCGTGTATTACGTGGACCACAACACGCGCACGACCACGTGGCAGC
GCCCCGACACCGAGCGGCTGGCGCGCTTCCAGCACTGGCGCGGCGAGCGGCGCCACGTAG
TCGCGCAGGGCAACCAGCGCTTCCTCTACCCGCACGTGCAGCCGACGCACCAGCCCGACG
GAGCCGAACACGAATCACAAACAGGAGTGGCGGGCGCAGGTGGTGGGTCCACTCCTGCCC
CGGATGACGGTCTGGGCGCACTGCCCGCCGGGTGGGAGCGTCGTGTGCAACCCGACGGAC
GCGTATACTACGTTAACCACAAGAACCGCACTACACAATGGGAGGACCCACGAACCCAGG
GGCAAGAGGTGAGCGGCGTGGAAGAAGTTCTGCCAGCGGGCTGGGAGATCCGCTTCACAG
AGGAAGGCACGCGGTACTTCGTGGACCACAACACGCGCACCACCACGTTCCAGGACCCGC
GGCCGGGCGCGCCGCAGGGCCCGCAGGGAGCGTACGGCGTGCCCCGCGCCTACGAACGAT
CCTTCCGCTGGAAGCTCAGCCAGTTCCGTTATCTCTGCCAGAGTAACGCGCTACCCAGCC
ACATCAAGATTACACTCTCGCGGCAGACACTCTTCGAGGACTCCTACCATCAGATAATGA
GGCTACCTGCTTACGAACTCCGCCGACGGCTTTACATAATATTCCGTGGAGAGGAAGGGC
TGGACTACGGTGGAGTCAGTCGAGAGTGGTTTTTCCTTTTGTCGCACGAAGTTTTGAATC
CCATGTACTGTCTGTTCGAGTACGCCAACAAGAACAACTACAGCCTCCAGATCAATCCCG
CCAGCTACGTGAACCCCGACCATCTGCTGTATTTTAAATTTATCGGAAGATTCATAGCGA
TGGCACTGTATCATGGCAGATTCATATATTCCGGGTTCACGATGCCCTTCTACAAGCGAA
TGTTGAATAAGAAGTTGACGATGAAAGATATCGAGTCGATCGATCCAGAGTTCTACAACT
CGCTTGTATGGATCAAGGACAACAACATCGACGACTGCGGTCTCGAGATGTGGTACAGCG
TTGATTTTGAAGTTCTCGGTCAAGTTATACACCACGAACTGAAACCGGGCGGCGACAAGG
AACGCGTTACTGAAACAAATAAAGAACAGTATTTACAACTAGTCACACAATGGCGCATGA
CGAGGGGCATCGAAGAACAAACAACGGCCTTCCTCGATGGATTTAATGAGGTGGTGCCCC
TCGAGTGGTTGAAGTACTTCGACGAACGCGAATTGGAATTGATGCTGTGCGGCATGCAGG
AGGTCGATGTCGACGACTGGCAACGGAACACGATTTATAGACATTACACGCGAACCAGCA
AACAAGTTATGTGGTTTTGGCAGTTTGTAAGGCAAATGGATAATGAAAAACGAGCACGAT
TACTTCAGTTTGTGACGGGTACATGCAGAGTTCCAGTAGGTGGTTTTGCGGAATTAATGG
GCTCTAATGGACCCCAAAGATTTTGTATAGAAAAGGTTGGCAAAGACACATGGCTGCCGC
GGTCGCATACTTGTTTCAACAGACTCGACCTCCCTCCGTATAAAAGTTACGAACAGCTGT
GCGAGAAACTGAACTACGCAATAGAAGAAACTGAAGGATTTGGACAAGAATGATTTAATT
GTATAAATGATGTTAGATAATATAGTGGATAATGTAAATTATTGTCACATTGAAATTACT
CTGCACCAGCTCGTCAATAAAAATATCATTCACCAATGGAATTGGTGCTGGTAGTAAAAG
ACCAACCAAATAATTATTACATATTTTATGAATATTTTGTAACAATACTTAGCTGTCATA
TAATTTTATGTAGATATCATTAGTATTTTATCAGTTGTGTAAGATATATTTGTTTTTAAA
CTATAATATTTAAACAATGTTCGTTTACGAAGTTCAATAAATAATTATTAAAACAGTG
(3298 bp)

- SilkBase 1999-2023 -