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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13347_c0_seq1
Scaffold_idBomo_Chr18
NCBI non-redundant
(nr)		PREDICTED:_ribonuclease_3_[Bombyx_mori]
Ontology
GO:0001530 F lipopolysaccharide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0010468 P regulation of gene expression
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0042254 P ribosome biogenesis
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0070877 C microprocessor complex
GO:0070878 F primary miRNA binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
Transcript
Level		FPKM:2.89 TPM:2.91
ORF EntryO_BomoSK13744_complete:A_BomoSK_comp13347_c0_seq1
Sequence
(Nucleotide)
AAACAAAAAAAAAAAAAAAAAAAGAAATCTATCGAAATTCGAGAGAACCATCAAGACATA
GCTATTCTCCCCAAAGAGGGCATTCTCCTTTTAGGGGACAGTCCCCTCACATAGGACATT
CTCCACATGGATATTCTGATAGGAGCAGGAGGGAGAGGGATAGAGATAGAGAACAGAGGA
ATCCGACAAGTCATAGTCCTAGATATTGCTCTAGAAGTCCACCAAGATACAGTTCAAAAT
TAAACAGAAGTCCTTCTCGATATAGCTATAGAGAAAGAGAGAAAGAAAGATATTACATGG
AGAGAGAGAAAAAGTATTATGAAGGAAGACGAGAATATGGTAGAAGAAAATATGAATATG
ATGTTCGCCGCAGTGAATCTCAATACAAAGATTATAGAAGCCACAGTAGATGTGAAGGTA
GGGATAGATCACCAAGCAGAAGGGCGCATTCTCCTAGTAGGGAGTCCAATAGAGAAAGTC
TGACGAGAGAAATGTCACTTCACCGACAAGAATCACTTTTAGGCAAACCAATGACAGATC
GTGAAAAGATTTTGGAAGAATATAGGAAAAACTACTGTAGAACTTCTGAAGATTTTATAC
AGAAAATGGAACAGTGGTCGAAAGAACATCTTTCTGAAGGAGAAGAGTCGTCAATGTGGT
ATAGGAGTTCACCAGCTGAGCTCTATTACAAAGAAGTCCAAAATGGTGAGGGAGTCGAAC
AAACTTTAAAACTGCAGAAACTTTGTGAAGTATTCATGAAGAAACTCATTGAGAGGGGAC
GTAATGCAAGGCCTGAGGTTGATGAGCTCCCACCCTTAAAGCCACCTAAATCGAAAATGT
GCAAACATAAACTTGATGAAAAAAGCTCATCGTCGTCATCATCGTCATCATCATCAGAAA
GTGACGGATGTTTAGATGAAGAGGGCTTGCAGGGCTATAGTGATAGGATAATGCTAGAGC
TACAGCGGAAACAGAGTCATCCCAGGAGATTGCACCCTGAAATGTGGTTTAACAACACCG
GCGAAATGAACGGCGGTCCGTTGTGTCGGTGTAGCGCCCGAGCCCGTCGTCACGGCATGC
GGCACGGCGTCTACGCCGGCGAGGAATCATTCCCGAAATGTATTCCTGAACGAAGCAATA
TCGACAAACTGTATCATTATCGTATAACCGTGTCGCCTCCTACAAACTTTTTAATCAAAG
CACCAACGATCATAGCTCACGACGAACACGAATTTCTATTTTCTGGCTTCTCATTGTTCT
CGCACTACAAACTTGCCAAGTTGCCCATGTGCAAAGTCATAAGGTTCAATATTGAATACA
CAATTCTATATGTGGAAGAACCGGCACCAAGAAATTTTACCATACAAGAATTAAGTCTAT
TCGAGGAATTCCTATTTACGGAGTTACTAGAGTTGATTGATTTGGACCTGGGAAAAGCCA
CGGATACAACATGTTCACAATTCCATTTTATGCCTCGATTTGTAAGATTTTTACCTGAAG
GAGGATGTGAGGTACTCTCAATGTGTGAAGTTATAAAGTATTTGATTGACGAAAGTGGTT
TACTGATACCGATGGAAAAGTTGAGTGACGTACATGAAATGGATCACTACACCTGGCAAA
AGTTTGTTGATAAAATCAAAGGTATGATAGTGACTTACCCCGGTAAGAAGCCGTGCTCGG
TGCGCGTGGACCAGCTCGACCGAAGTCCGCCGACGGGCTCCGAAGCCGTTAAGAACCCTA
AAGCATTGAAGAAATACTTCCCTGAAATCGTACACTTTGGTATACGTCCGCCGCAGCTCA
GTTACGCTGGCAACCCCGAGTATCAAAAAGCATGGCGTTATTACGTTAAATACCGCCATT
TAATAGCGAATATGGCGAAGACTTCTTATAAGGAGAGACAGAAATTAGCCGCTAAAGAGG
CTAAGCTGCAAGAGATGCGCACTCAGTCTAAAATGAAAAGGGACGTGACTGTCGCTATAT
CGTCGGAAGGGTTCCACACTACCGGACTCATGTGTGACGTCGTGCAGCACGCGATGTTAA
TACCGGTGTTGGTGCGTCACCTCCGGTTCCACAAGTCGCTCGAAAAACTCGAGAAGAAAA
TCGGTTATGTTTTTAAGCAACGAGCATTGCTCCAGACTGCATTAACTCATCCATCGTATA
GAGAAAACTTTGGTACCAACCCTGACCACGCCAGGAACAGTCTCACTAACTGCGGTATAC
GACAACCGGAGTACGGGGACCGAAGAATACATTATACAAGAAAGAAGGGCATAGTAACAC
TCATCAAAATAATGTCCAGTTTCGGGAAAATCAGTGAGACAGAATCAGAGATTAAGCACA
ACGAACGTTTGGAATTTTTGGGAGATGCTGTAGTGGAATTCTTGTCTTCGATTCATCTTT
TTAAGATGTTTCCTGGGCTGGCAGAAGGAGGACTCGCTACTTACAGAGCTGCCATTGTAC
AGAATCAACATTTAGCGCAACTTGCTAAGAATATAAACCTTGAACAATTCATGTTGTACG
CCCACGGTTCGGACCTGTGTCGCGACGTAGTGATGCGACACGCGATGGCGAACTGCTTCG
AAGCTCTCATGGGCGCATTGTTTCTCGACGCTGGACTTGAGGTAGCGGACCGAGTCTTCT
CTTTGGCATTGTGGCACAATGAATCGGAGCTGCTTGAAGTTTGGACGAAGGAAAGAGCAC
ATCCATTACAAGAACAAGAACCTTTAGGCGATAGGAAATATATAAAAGACTTCGAATTCT
TACAAAAATTGACCGACTTCGAAGAATCTATAGGGGTACAGTTCAAACACATACGTTTGT
TGGCTCGTGCGTTCACGGATCGCTCAGTCGGCTTCACTCTCCTCACGCTCGGATCCAACC
AGCGCTTAGAGTTCCTCGGCGACACGGTGCTCCAGCTGGTCGTGTCCGATCGACTGTACA
GACACTTCCCTGATCATCACGAAGGCCATTTGTCGCTGTTACGGTCGTCTCTGGTCAACA
ACAGAACACAGTCTATGGTTTGCGACGATCTGAACATGTCTGCGTACGCCATATACAATA
ATCCTAAAGCGAAACCGACCACAAAGAAACATAAGGCTGATTTACTCGAGGCTTTCTTGG
GAGCATTGTTTATTGATAAGAACCTGGAGTACTGTCAGGCGTTCTGCAACGCGTGTCTGT
TTCCGCGCCTGCAGCAGTTCATCATGAACCAAGACTGGAACGATCCCAAGTCTAAATTAC
AGCAGTGCTGCCTCACGTTGCGGTCCATGGAGGGGGGCGAGCCGGACATACCAGTCTACA
AAGTAATCCAGTGTCTGGGACCTACGAACACGCGAGTGTATACTGTGGGCGTGTATTTCC
GCGGGAAGAGATTGGCGGCCGCACGCGGACACTCCATACAGGAGGCCGAGATGAACGCGG
CCGAAGAAGCCTTGAATACTGCATACGGTTTATTCCCGCAATTAGATCACCAGAAACGTA
TAATAGCGAAGAGCGTACGTAAGAAGAAGGGGGATCGCGAGGATCCGTCCGAGAATAGTT
CGCACGGAATGCACGACGACAACGTACCGAAAGCTTACAGGCTCGGCAGCAAACCTGACA
GTTCTGATGAAAGCAGCGTCCACAGCGGATCCGAGGATCCCGAGGATCCCGAGTCGCCGG
CCAAATCGGACGAGGACAGCGGCCTAGACAGCGACACCGAGTCGGAGCTGCCGGGCAAAC
TCAAAAACGTCCAAGTCAGCAGTCTGCTCAGCGACATGGAGAAAATAAAACAGGAACTCA
TCAAGAACAACGAGTATGAGAAACTCAAGGAGAAATGCAGACGGTCCGACTCAGATGAAG
AATGAAACGAATAGAATTTTAAAAAAACATACACACACACACCGACAGACAGACACACAC
ACTAAGACACAGGCGCACGCACACACGCACGCGTTGATTTGTGTTTTAAGAAACGTATCT
GTAATGTTTACTCCAAGCAAGTTCTTTCATCGAACAAGTTTATTTAAATTTAAATAGGCA
ACTTTTGTTCGTAGCTTTTGAGACGTTTGTAATTATTGCATTATTTATGCATTATTTACT
GCCGATATTAAGCATATCCACATTAAAAAAAAACTCCATCGATAAATCATCCCAGAAAAC
ATAATTACTGGTTTGTTATATTTGAAAATAATTGTAATTATATGTAACGTTTATACGTAA
AGTCTTCGTTAAGCGTTTTGCGTCTCTGTATATGTATTATAAGTTCTTCAATCTGTGTAG
GTTTTATTAAAATAATATTGTGATTGTACGGTTTGTACATACCTAAATAATACGTGGACA
CGCCGTGCGTCGTCATTGTGGTGTCAGGTTATTTTATTATATTATTAGAGCAGTGCACTT
AGCAACACGCACTCGTTAAGACGTTACCATCTGTGCTTAACCGACATAATAAAGGTGCTC
AAACAACACACTAACTCTTTGGAACTCAACAAACTTCCCCTTGGACCCCAACAGTGATCA
TAAAAAAATTCTATACATTTCTGACTACAAAAATGTATCAGCCCCCATAAATTTCCTGCT
AATTTCTTTTTGTTAATTTAGAAATAGTTGTACCTACGATTCCTTGACTTGGTTAGCATC
ATTCATCTACCATTTAATGGTCGATAGAAGCCGCTACAATTTTAATATTTTTACCTTTAG
ATGTAAGCTGTAAATTATATTGTCAGTAATAAGATTAAGCGTAGATCTTGTGATTATGCG
TAATGCAATATGTTGTTATAACGAGTATTCCTTTGTAAAGAAAAAAATACTGTGGAGTGT
AGAGGTAAGGATAGCTTTTTTTAATTTTTGGTAGTAGGTGGTATGGTGGTAGGACCTCTT
GTAAGT
(4866 bp)

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