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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13314_c0_seq1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		PREDICTED:_transcription_elongation_factor_SPT5_isoform_X2_[Papilio_machaon]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000176 C nuclear exosome (RNase complex)
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007052 P mitotic spindle organization
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007549 P dosage compensation
GO:0008023 C transcription elongation factor complex
GO:0032044 C DSIF complex
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0035101 C FACT complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
Transcript
Level		FPKM:14.52 TPM:14.61
ORF EntryO_BomoSK13598_complete:A_BomoSK_comp13314_c0_seq1
Sequence
(Nucleotide)
TGCGCGAGTAGGACGAGGCCCCGCCGGTCGCAGCCCCGGCCCCCGCCCCGGCGATGTGCC
CGCGGTCCACGGAGATGGTCTGACAGGAGGAGTGCAGCTCGACGCGCGCGGTGCTGCCGG
TCGCGTCTTTGACGATCCCGACGTTTCCCTTGTATGGTCCCCCCGTGATCTTAATGGTTT
GGCCAATGAGCTCGCGATCCCGAGTGACGCCTCGACCTCCGCCGCCGCCTCGGCCCCCAC
GACCGCGAGGGGTGGAGCCTCCCCTGCCGGCCCCTGGGTGTGCAGGAGAAGCTATCCGCG
GCGACATGAAGCCGAGCGTGAGTCCGGCGGCGGTGGCATTATTTCCCCTGGCTCCACCGG
CCAGCTGCAGGTGGCGCGTCTTGCACACGAAGATGCCGCCGTTGTCGAGGTACATGTGCG
ACTGGAGGAAGGCGAAGTTCCGGTAGAGATGTTTGATTTCACCGTCGCGTCCGGCATGCG
GCCCGTCGATTACTTTAACGATGTCGCGCTTCTGAATCGTGTTCTCCTCGGAATCGAGCG
CGACTGTAAACCGGTTCTCGCGGCGTTTCTGTAGCGCTTGCGGCTTGCACTCGATGACCT
TGCCCTGCATGCCGAGCACGTGGAAGTTCTCTTTCTCGAGGCGCACGATAACTCCGACGG
TCTGTGGATCCAGTTGCACCATGTCTCCCCACTGGAACTGTCCGAGGGAGTCAACGCCAG
TCGCCATGTCTGAACAGAGCTGTAGGTCACGGGGCAGCACCTCAAGCTCGTGCATGGTGA
GGTCGGAAACAAGCACGACCCTGTGCGGTTCGACGCGCACTATGAGGCCTGTGTCGCCCT
CGTAACGCCCAGCCACCACTTTCACGTGATCACCCATTTTGAAGTACTTGCGCAACTCAT
TCGGATGGAAGACAATTGGGTCCTTAAGACCATCGTGTTTTGGCATGACAGTGATCATCG
AACCGTCGATAGCAGTGATGCGGGCCTGCAAGTTCGCAAGATCTCCAGTACAGACTTCCA
CATTGTCACCCATGGAGAAGGAATGCAAGCCGGCAGGGTCGTCCTTGGCGGGAGCAGCCA
ACTCAATATCGATACCTTCCGGTTGCTCTTCAAATCTTTCCAACTCTGTAAGTGAAGGCT
TGACACCTTCTGACAGTATCGCCGACATTGTAAAGTTTTTATACAGAAATCCTTTCCTAG
AGTACCTATTGCCCTCAAATATGAGGAAATCACCATCGGAAGTAACTTCTCCACCGATCG
CTCGGATTGCCTCTGGATCAAAGGGTTTAGCAGGAGGCCTTCTCTTTTTCTTTCGCTTTG
CTGCTTCACTATCGCTCTGTACTGTTCTTAAAGCTCCTCTCAGTCTTGTATAATCTATTC
TAGGAAGTAGTTTCAAATGCACTTGATTCTGTGCCAAGTCTACATAGTCAACTTGAGCAA
TATCATCTTTGTATAAACCTCGTTTTAATCTGACCCATTGTTTCGGTTTAAGTCCTGATT
GCTTTTTGACTACTCTGAGAACATCAGTCATTTCCTTAATAGGCACCATTTCTTGTTTCC
ACACTCCAGACTTAAGGGTTCCCACTTTGTCTATAATGTTTTTAACATGTGTCTGCTTGA
AAGCCTCTATGTACACATAGCCTTTGACTCCTTCTGGTGCTACAACTGACTTTATCAAAA
AAGGTTCTTCCGAGAATTGGAAAGCAATAAATTTTCGCATCAAAAGTAAAACAGTAGCCT
TCTCTTCTCCAATCCTACATCTGACCATCCACAAATTTGGATCCTTGATACCGGGTAGTA
GAGTTTGCTGAGTTATTTCATCAGACATCTCTTCTCCACCTTCACCAAAGTGTCTGAGGG
CTGCTGATTCATCTGCATACTTATTTCGAAGATATTCTTCAATCTCCTCCTCTTTCTGTG
AATCCCAAAGGTTAGTGCCTCTTCTTCGACCTTCAATTTCTCTAGCTGTTGGCCCAATTT
CATCTACTTCATTTCCTACAATACCCATTTCTTGGGCTCCCTCTTCCCATTCGTCATCTT
CATCAACTTCATCATCCACCTCAGCTTCGTCAATAATGAATCCACCATAACGACTGTCCT
TTTTTCTTTTCTTCCTCAGCCTCTCCTCTTCTTCGTCTTCTTCATACTCCTCAGAATCAA
CCAAATCCTCACCTTCGGGCTCTTGTTCATCCTCCACTTCTTCATCGCCAGATGCTTCTT
TGGCTTCATCATCTCTATTTTTACTTGCATCTGAACCTACTGAACGACTTCTAGAGCGAG
ACCTAGATCGTGAGCGGGATGGAGTCCTAGAGGGGCTACGGCTTCCAGAACGCGACCTGG
ACCTTGATCGAGAGATAGAACGCGATCTTGCCGACCGATTCGATGCAGCGCTGCGATGTG
ATTGTTTTGATACAGCACTGCCTGCCTCGGACCCACTCCCCGAATAGTTACTACCTTCCG
AATCCGACATTACTACTTAAAACGAATGCATTCGAACCATTTAGGTAATATTTACTAAAC
TTATTTCTTTAAAACGAACACGCAACAAACGTCACGAAACAGTGTG
(2566 bp)

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