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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13288_c1_seq2
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005685 C U1 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007010 P cytoskeleton organization
GO:0008360 P regulation of cell shape
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016477 P cell migration
GO:0016607 C nuclear speck
GO:0032465 P regulation of cytokinesis
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:7.25 TPM:7.29
ORF EntryO_BomoSK13458_5prime_partial:A_BomoSK_comp13288_c1_seq2
Sequence
(Nucleotide)
GACGAGTTCAATATTATTACTACATAACTTAATACTATATAAACCATTTCGTTAAGCATT
GAAAACGAAACGGTAACTACGTGTAACAAAACATCTGTAACATAAAATATTCTAAGTTTG
CTACGCGTATAATTTCATCGTAACGAGTTGATTATTTTCATTATTGTAAATACTATATTA
TACCTGATGAAAATATCTACCTATTAAGCTTTGAAAGAATTTCATGGTAGTCTACACGAA
AACCACAAAAGACAGTCAATCAGAGTGATATTTTGAAAAAAAAAAAGGCTTTTTTATAAA
TCGATTCACAAATATTTCTACAATGTACTGGTCAAATGTACAAAGCTGTTCCAAAGTTGC
AATGTTCAGAGCGCTGATTACATACATACATGCTGCGATGCGATGCATGCGAGCTGAGGC
TCGGCGAGGCATAAGGCCCATACATGTAAAAAAAATTCTAAGGTCGCTTTTGTTGCCATA
TTTTCAAAATGAGATTCAATTCAAAATACAGAAAGCACTATGAAAATCAACTCGAAATTA
GGATCAGTTAGTTTGCTCCGTCTTCATTTTCGCAACGAATAGGGATTTTTTTCGATAAGG
GTCTAGAAAACGGTTTCCTAGAAATTCTAACAAATTATAAAATTACACCTTCTCGTAAAA
AGTTCCAGAAAAGAAACTATAACCAAAGAAGAAGATTTAAAACTGAAGAAAAAGAATGGA
CTTTCCTTATTGGAAGAGGCCTAGCAGATAGATGGTGACTAAATATTAATTTGTATTATT
CCCATATACTCTTTTAAGTGAGTTTTTCACAAAACTGTATTTTACCAACTGATTTCCATC
CCAAAAATAGTTTAATCAATTTGTTTGATTTTTAATCATAGATTTGGAGCATGGTTATTA
ATCGTATCGAAGAAATCAATGTTAAAAAACAGGGTCATTGCCTTATGTCATGTTTGCTGA
CACACGCAAGTCTTGTGGTGTTGCATGTTCATTTTTGTTATCAAATTATCTGTTTCCATT
AGTAGGTATTTTTACTCTAGTAAAAAGTAGATAATAACTATTATTATACTTACCATTTAT
GTCATATTATATTACATCTATATATCTACACTTTCCATCTATAGTGTAAGAAAAATGTTC
ATCATATGTGATTGCATTGCACGACACAAATGACATTATTACATAATTTGGGTTATTTTA
CATTATTTCATATTGAATTTCTTTACTCCACATGAACTATAAATTATAATCTAAATATTT
ATACATTATAAACTCTTGCAATGGTTCCAAATGAAACATCTATGAATTAATTGGAAGGCA
GGCAGGTAAACACAAAAGGTTAGAATTTTTTTATATAAATAATAATGATATATGTTTTAC
AATAAAATTTATATAAGTACTCTCCTAAGCTGTTAGGCATTATAAACATTATAAACGTAA
GACACGCGACTCGTCTTGTCACTGGCTAATCTATAGGAAAACTTTATTGATTCATATCGT
GCTAAACAGTACGACCGCAGAGATTACACACGAATGGCAGATTTACGAACGCGAAGCTTT
CCGCGAGCCCGAGGCAAGTGGAAAAAGGATTGTCTTTGGATTTCCAATCGAATAGTAAGT
GATAGAGACATATTTCATATACGAATACCGTTTTATTTCATGTCGTTTCTTTTATACCGC
CATCTTTAATTTTATTCTTGTTAAACAATAAATAGAACTTTTAATGGTTTTTTTTTATTC
AAGTTTAGCCTTACAGGAAAATAAAGCAACGCGCTGTGACAGTATGAGCGAGGAAATATT
ATTTTAGTGTTGTTTTTGTTCCTCAAGCCCTTTTTTCACTTGGCCCTTGTTTTGTGTGGT
TGTTGACGAGGAGGAGGGTTGCGCTCGCGACTGTGCGGGGTACTGGTTGAAGATGTGCAC
GTGTGTGACGCGACGTCAGTCCGCCTCGTGCTCGTGCAGCTGAGCTAGCAGCGCCGCACG
ACGCGACTCCAGGTCGGCGTCACTCCACGCCGCACCCGACCTCTCTTTTTTATCTTTCTT
GTCCTTCTTCTTCTTGGGTTTGTAAACGATTTCCGGTTCCTGTTCCTCTTCCGGGCTGCT
GGGCGCACTGCGTTTCGTCTTTTTGTTTTTGTGCCGAATCACTTCTTCGTCGTCTGTGAT
GCCACCCTCCTCGGGAGACGGTGATTTCGGAGCAGGAGAGTGCCTCCGATGCTTCTTCTT
AGTTTTCTTGGGTTTCCGGCCCTCGTCGGAGCTCCAAGTGCCGTGGCTCGGTGCCGGGGA
TGGCGACCGCGACGCTGATGCTGACCGAGACAAAGAGGCAGAGTGAGAACGCTTCTTCTT
CTTTGATCGTTTGGACTTCTTTGGTTTTGGATGGTGATAGTGCATGCAGCTTTCTTCTTG
TTCATGCTGATAATCCTTATAAATTCTAATTCTGTCTTCTTCACTGGTGACGGCGGCAAA
CTCTGGCGCGTTCAAGTCAAGTTTCTCCTTAACCTCGCTCCACGAGAGCAGGTGGTCGAT
GTTTGCATCACTCAATGCCCATTTAAATGCAGATTCTATTTTCTTTTGAGCTTTCGATTC
TTCTTTCAATTTCTCCTTCTTTCTAGTTTCAGCCTTCTCTAAAAGCGAATTGTAAGTAAG
TTTGACATTTCCGGCGTCGAGCGAGGCGGACTTGCTGTCCTCGCACACGACGGTGGCGAA
CTCCTCGAACGTGGTCTCCGGTTTAACTTCGAAATTCTTGTCTTTCAGTATCTCCTTTAT
TATCTTCTTTTCGTCGTGGAACCTCGCTTTCAAATTTTCAACGTAAAACTTGAATAAGTC
TAACGGTGTCGATCCGCTTTGTCCTAACATAGCTGAAAATCTCATGTCTGCAGAAATAAC
CGGATACAGCTCGACCCATAGAGACATCGATGTCAATTTACCTTCT
(2926 bp)

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