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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13220_c0_seq1
Scaffold_idBomo_Chr23
NCBI non-redundant
(nr)		pleiohomeotic_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000400 F four-way junction DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0010225 P response to UV-C
GO:0010629 P negative regulation of gene expression
GO:0016363 C nuclear matrix
GO:0030154 P cell differentiation
GO:0031011 C Ino80 complex
GO:0034644 P cellular response to UV
GO:0044212 F transcription cis-regulatory region binding
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
Transcript
Level		FPKM:7.59 TPM:7.64
ORF EntryO_BomoSK13167_complete:A_BomoSK_comp13220_c0_seq1
Sequence
(Nucleotide)
CTGAGAGCGGCTGAAAGTACGGGCGTCCATTTTCCTACGCCATATTGAATTTGGTCGGAC
ATCTTTGGACGCCATGTTTAGTCAGACATATTTTATAAACATTTTCGCGTAAATTTCAAA
TATTTTTCAATCAAATTACCGAACTTTTTTTCAGTGAAAACAGTGGTGTCGATTGCGGTA
ATAACAGCTTTAAAAAATTTAGTGCCAACTCGTCTATACATAATTGTCTCCTGGGGTCTG
ACGGAGCTTTTGTTACAAGATAAATACAGGGCTCCATCAAGATGATGAATCAAGAGATTA
TGTGTGAAGTGGAAATTGGCACTCATGGAGCTATAGAAATAGACGGGGATGATCAAGTTC
AAGTTGGTGTTAAGTATGAAGAAATAGAAACGGGCCAGTATGAGGAATATATAACTGATG
ATCAATATGAAGAGGTTGAAGAGCAGGTCATTGGGATGCAGCATCTGGAAGAAATTGGGA
GTGAAGAGGTTGTATTACCAGGTATATCTGGAGAAGAAGTCCTGACATCAGCTGGTGAGA
ATCCTTTTGATCCTCTCTACACGGATTCTGCTTCCACCAGCAACAGGACAAATCGAAGCA
GACCTAGAGCTAATAATATATCGAGCAACATACAACATCTAATGCCAATAGGTGAAGTAC
CAATGGGGTTAATGGACGGTATGAGCGCGACCAGGGGCACCACTAGAAAGTGGGAACAGA
AGAAGGTCCAGATCAGGACAATGGAGGGAGAGTTCTCAGTCACCATGTGGGCTACAGGAG
AAGACGATGATGAAACGTCAAATCCTGAACCAGACCCTGACTACACAGAGTACATGACTG
GGAAGAAGAATATATTAGGAAACGAATCTATGCCGGGTCTAGATTTATCGGATCCGAAGC
AACTGGCGGAGTTCGCGCGGCCCGGACACAAGATCAGACTAAAGAAACCATCCCCCGAAA
CTTCAGATAGAACAATAGCATGTCCACACAAAGGCTGCACAAAAATGTTCAGAGACAATT
CAGCGATGAGGAAGCATCTGCACACGCACGGACCGAGGGTGCACGTGTGCGCCGAATGTG
GAAAAGCCTTTGTAGAAAGCTCTAAATTGAAACGACATCAGCTAGTACACACTGGAGAGA
AGCCCTTTCAATGTACGTTTGAGGGCTGCGGGAAGAGATTCTCACTAGATTTTAATTTGA
GAACGCACGTCCGCATCCATACTGGAGATCGACCGTACGTTTGTCCCTTCGACGGTTGCA
ACAAAAAATTCGCTCAGAGCACAAACCTGAAGTCGCACATACTAACGCACGCGAAAGCGA
AATCAAGAAATTCATTATCAAGGAACGGCGGGAATTCGTATGAGTCGGCACGAACGACCC
CACAGTACGTTCAATTGGAAATGTCACCGGATGATTCTAATCCACAACTCGTGTTCTACA
CGCACGAGTGAAAGGCTGTGATCGAACGAACAACATGGTTACTACTGTGCTATTTTGTGT
GGTTAATGATCGGTCTTGTGTGATTTCTACACAGCGTAAGAACAACGGTGTTCCGTGATA
AGTGCATTGTAAGAGGAAACTGGAAATATGTGACCAAATAAACGATATAGTGTAAATTCG
ATAAGTTGTAAATAATTTATAGTCTACGTTAATATAAATGGTGGGTGAGAGTGACTCTTT
AACTAAGTGATGTGAAAAATGAAGCGCTTCTTTTGATATAATAAAATAATGTCCATTGTA
CATGTACTAATATTTAGGTAAGTAGTTTATCGGTCCAAATTTTATTTCATAATTAATCTA
AATGTTTCTATACACTTATTTCTCCTACGAATCATACAAAATGGAATGTCTTCTTAACTT
CAGCTCAGCATTGTCATAAACAACTGTGAAAATTTACATTGCTAATATATTACATGTATA
GTGATCAGAACAATAATGGTTTATGAGTGCTGGTTAAGAACAGCTATTGTAAGATCACCG
GAAACTATTGGTGATGCATTGTAAGTTTTTGCTAGGTTTCTTTGTACTTTTTACTAATTT
GGATTAAATCACTCCCTTCTAAGTCCTTGTTGCTGAGTAAGTCCAAATGATACCAAAAAC
TAATACAATCCCCAAGGCAATGCATATTTTTTGCAATTTTTGTGCTACCATTAGCTAAAA
TTACAATTCTTATTATGTCTTTACCTGCAAGTGACTCATTCTCAATGTGTCTAATTTAGA
CATACTTGGAGTTACCCAACGTTTGAAAGAAATCTTCCTCGAGGAGCCTGTCAACTGCAC
TATTCCATTTATTAGAAGAAAATTAAGTGACCAAACTGCCGATCAAATATTCTTTTTGTT
AGATCGAGGTTGATGAAACTATACAGTTTGTTATATGCCGAAAAGATCACCTGATATTCA
GTGAAAACTGGGGCTTATAAATGTAGCAATATGCATTCAGTGTATTGGCAAAACTGATCT
GGTTTGGATTTCTTTCTGTTCTGTCACTTCGTTCCTTGTGGAATACATATTTATGTAGTC
ATATGTTTATGTTATCATTTTACTGTAAAAAGTCCAAATGAACTGAATGATAATTTGTGA
AATTCATGTCATAAGACATTGCTGGGCTGAATATTACTTTAACCAACTCAAATAATAATC
TTAGAAATAGTAATAGTACTAAAACTCTAGTATCTTTTCAAAACCTACCATTGCAAGAGA
GATTTTCTTATTAATTTTCTGGAATATCATTGTCTTCAATACCGTTTACGATATGCAACT
GTAATGAACTGCTTTACTCAGTATTAAATTTTTTCTTCAAACATTAATAAGATAACAAAC
AGACAATTCTAATGGTTTTACATTGTCATAGCCTAATAATTACCTATACTTCAAAGTAGT
ATTTACACTTCGAAGCTTTAATACCCATTTAGCTAAATAAATAAAATTGCAACCCAACCC
GAACCCCTAAATTTGCTTGTGTGATAGCACTTCCTATTTTTACATTTTATAGTTCAGGAT
CTGATAATTGACTATAAGGTAAACACACTACACATTCATATGCGAACTAAATAAATAAAT
AAATTACAGCACTCTTTATGATTCAAATAGTGATCCAATTTGTGTCACGATGAAAATTTT
AGTTCACTATAGTGAAACCAATGTTGCAATTCCTGTTGTGTTGTATGTAGCATAAATCTT
GAGTTATACCAGATCGGTACTCGATTACATTAATATCGAAAGGTAAAATGGAAAATTACA
CTTTGTGTAATTTACAAAACTTTATTTTGATGAGTAAATTTAAAGAAATGTATTTAATTC
TCTCATGTTTTTACACCATTTAAAGTTAAACACATTTGAATTGAGCTCGGATACTGATTA
TAATATGAAATACTGCGTGGTTCATTATTATACGGTAGAATTGGTAGTGAGTTTTCAGCT
AAAAGAAAACCTCTCTAGGAAGCTCACAAGATACCGTACCATTTACAAACTATAACAGCA
GTTCAGGGGAGTACAGTTAGTGAAACTGAGATATCTGGTCACTGTTATAAGTATGTAGAT
ATATAACATTTGTTATGACGTTAGTCTTCCACGGTTAATAAAGATTTACTTATAGGGTAT
CTTAATTTTTTTCTGGGTTTAAAAGTCCTGTGAATAACTGCTCCCCTCCACAACATTCAT
ACAGTGAATCTATGCATTTCTACTAAATTTGTCCACAAACATTTTGTTTCTAATTTTAAC
AAGATTTTTAAATCTTAAATTTATGAAATTTCTATATCATCGGTATATTTAAGAATGTAG
AGAACCACAATGTGTGCCCTTTTGAAGTATTTTTAATGTCATTGTGCAATATACGTAATA
ATATGTTAACTGTGAAGTTATTACTTAAGCATTCTTATGCTCTCAACTCGACTACTGATT
GCTGACCTGGTAACACTTTGGAATTACCTGACAAGGCAGGTCAAGTCAGGTTGGGGAATA
GTATCTATAGGACATTGTGTTCTCGATATATGTATGAACTAATTAGAGTATTCCTACCAA
GTTTGGTCAAATTGATGGGTAAAAAAATCTATTTTATTATTCAATGCATATAATAGGTTC
TTGAAAAAGAGGAAAACATCAGAAGTAAAGAGTGAAGAAAATATATGCATATTCTAATGG
TCTTAAAGTTTGAAAACACTCAATTTGACCACCAGTATTGATAGGTTGTGTTAAAAGCAA
TGAATTCCGAAATCATTTGCTTATTTAATATTCAAGAGCTATTTTGAATGTGTTTAACTG
TAATGAAATATTTAATTTTCGGTTTTTATTTCTGTTTTCTTCTAATTTGAAATATGGAGA
GAAGTGTTTTGTAATATATAATATTGTAAGGTTTTTGTAATGACTGAT
(4368 bp)

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