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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13175_c0_seq2
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		DEAD_box_RNA_helicase_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010501 P RNA secondary structure unwinding
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
Transcript
Level		FPKM:10.12 TPM:10.18
ORF EntryO_BomoSK13031_complete:A_BomoSK_comp13175_c0_seq2
Sequence
(Nucleotide)
GTCCAACATTTAATCCATAATAAACTACAAAACTTTATATCTAGCTTTGTTGACCATGTG
ATGGGCCGAGGTCTGGAGTTTGAGGAGCTCTTCCTTGATGAGCCGCGTTATCTCGGATTT
GGCTTTGGCAACGGCCAGCTCCTGCGAGCTCTCTATGGCGAGGTACAGCTTGCGTTCGCC
CTCGGGCGGCGCCTTGCCCGGCTGGACGTACGTGCCGCGGACCGTTATACCGGCCTCTGA
GTACTCGCTGATTAGAGCTAGCGCCTCCTTGCTAGTGACCCTCCACCTGGCCTGCTGCGG
GAAGTCATTGATCTCCAGCTCGGTCTCGTACTTGCGGAACACCTCCTCGGTCGGTTCGTT
TGTGTTGTCGTCTCGCGGCTGGTAGTTGAGTCGCGTGTTCAACTTCGCGGCCAGCTGTTC
CGCCACTGTTTTAGCCGTGATGAGTGTCTGCGAAGGCGCGCCCTTGAGGATCGCCTCGGC
GGCTTGTTGCGTGGCGCCCTTCTGGTCTGCGCCGAGTCCCTTGGCGAGGTTGATGCGGGA
CGCGAGCCGCCGCGCTAACTCCAGCTTTCCGTCCGTCGCGCTAGCAGCAGCCGCGGCGGG
ACCGGACACGGCCACGCCCGGTTTAATTTCCTTGACAATCTTCTTGGCAGCGAGCATCGT
CTCGATTTGTTGATCGAGATCTCCCTCCACGTCCTCGTCGTCGGAGTCCTGGAGGCCGAG
AGCCGCCTTCTGGTACTTTTTCTTTTCCGAAGCAGCCTGGGCTTCAGATTCGTCAAACTT
GAAACCTTTCCCACTAAATCCGCCTCCCGTGTGCACCTTCTTCCCGTCCTTCTCCTGCGC
CTCCTTGTACTTCTCCCACAGGTTCTTTAGTTCGGCGGGAGGACTGACTCCGGCCAGCTC
GAAGGCCCTGAGCACGTCGCCCGCGTACCGACCCTGCTCCGGAGTGAGGAAGGTCCAGGC
AAACCCTTTGTTGCCGGCGCGCCCGGTGCGTCCACATCTATGCACATAATCTTCATAGTG
ATTCGGGCAGTCGTAGTTGACCACCAGAACTAGTTGCTTGACGTCCAGCCCTCGGGCAGC
AACGCTGGTCGCTACCAGCAACTTGACCTTGCCGTTCTTGAAGTCGACTATCGTCGAGTC
CCTGTCGAATTGATCAATCCCTCCGTGTAAGCTCATGCAAGAATACGAGGCCTTCATGAG
GTCTTTTAACAGACTGTCGGCGTTCTCCTGTTTGTCCACAAAGACAATGATGCTTCCCAT
TTGACTGTAGAGTCCGAGGAGTTCCAGCAGTTTGAAGAATTTAGCTTCTTCCTCTAGTAT
AGCGACGTGCTGTTCCACATCCTTGCAGACCACACTTCTTCCACCAACCTGTATTTCGAT
TGGCTTCTGTAATATCCGACGAGCGAGAGCCTCCATCTGTCTCGGGAAAGTTGCGCTGAA
CATCACGGTCTGCCTGTCGGGTCTTATGTTGTCTATGATTTTCATTACCTGTGGTTCGAA
TCCCATGTCAAACATTCTGTCGGCCTCGTCGAGCACGACGTACGTGACGCGGCGCAGGTT
GGTGACGCGCCCAGAGTTGGCGGCCAACATGTCGATCATGCGTCCCGGGGTGCACACTAT
CATTTCGGCACCACGCTTCAGTTCAGCTATCTGTTCCGATATCCCGGTGCCCCCATAAAC
GCAAACCACACGTAATCCGAGTGACTTTGCAAACTTCTTTATATCTTTGCCGATCTGCAT
GCAGAGTTCCCTTGTAGGAGTCATTATGAGGGCTATTGGTCCGTCTGTATCTTCTAACGC
CGGTTGGTCCAACACGTGCCGGAACATTGGCAGGATGAACGCTAATGTTTTGCCTGAACC
AGTCTTCGCAATTCCTATTAGATCTCTTCCAGACATAATAGCAGGAATCGCTTGTGCTTG
TATCGGGGTGGGCTTTTCAAAATTCAACTTCTTTAGAATGTCAAGTTCTTTTTTACTGAT
ACCGCAATGCGCCCATGTCCTGATCGGTTTCGGACAGCCTTTTCCCTTGACACGAATACC
TTCCAACTCAGTCCTGTACGTTTCTACTTCCTCTGGTGTCATTCTTGCTAGTTCATTCAC
TTCTGTGTAAAATGACTTCCTAAATTGCATGTAGTCTAAACTAGCATGGTCTACTTTGAT
CAAGTCTTTCCTCTGTTTGGAAGCAAGATTTGCAGCGGCATCTTTTATGTCTTCCGTTTC
TTCTTCAGACGAATACTCCAAGCCATCTTGATTTTGTTCTATCAGTTCACCCTTATTTTT
CTGCTCAGTGACCTTTTTTTTGGCAGTGCCAGTAAGAATTACAATGCCAGTGCCACCTGT
TGTTGGAACACTAATAATTCCTTTGGCTTGGTCCATTTGATTGACTTTACGCACTTCTTG
TTGCACTTCTTGCATGTACGCATCCAAAGGATCAATTTCATCTTCTTCTTCTTTCTTTTC
TCCTATATTGTTTTTTTCTTTTCCTTCCGCATCTTCACCTTCATCACCAGAGTCATCTTC
AAGTGACCATTTCTTTGATGTCGGTATTTGTATATTAGTAACAATGCTTCCTTTTTGAAC
TTCTTTTTTAGCGGATTCGATTTCTTTACGTTTACGTTCAGCCCTCCATCTCTCTATGCG
TTCACGACGTTTTTGCATTTCAGCTTCCAAGCGGTTTTGCTCTTCTTCCTTGTCAACAGA
GCCCGGGTTATATTCAGAAGAATCAGCTTTGCTACTCTTTTCCTTTGATTTTGATCTCTC
CCTTTCCTTCTCCGGTGACTTCTTTCTCGATGATTTACTAGATCCATTTCTTTTATCATC
TCTTTTATCACTTTTTCTGTCCCGATCTCGCTCACGACTACGATCTCTTTCCCTACTGCG
ATCCCGTTCTCGGCTTCGGTCTCGTTTAGAGTCACGATCTCTGCTACGACTGCGCTTCCT
CTTTGAAGATTTCGAGCCCCGATCACGACTTCTTGATCTTGACCTCCTTCGTTTACGATC
CGGTGTGTCAGAACGACTTCGAGATCTACGTCGATCCCTTTCCCTATCACGGTCTCTCCC
ACTCCTAACCATTTTTTAAAGCAAATATAAAGAGATTTTTACACGTTTTATTTTTCTCAT
GCCTAAATCAACGGTGCCTTACTTAATACTAATAAAAGATTCTTGAAACAAAATGAGCTG
TGAAATTTGGTTCGATTGCTATGAGATAAAAGTACGCATAACAAAATCACAAAGCGCTCG
CTTGCATCCACGGATTCTACATTTGACAGTTGACTTTTTA
(3280 bp)

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