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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp13119_c0_seq1
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		PREDICTED:_sorting_nexin_lst-4_isoform_X1_[Papilio_xuthus]
Ontology
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006886 P intracellular protein transport
GO:0007067 P mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0019902 F phosphatase binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0043621 F protein self-association
GO:0045335 C phagocytic vesicle
GO:0051020 F GTPase binding
GO:0090386 P phagosome maturation involved in apoptotic cell clearance
GO:0090389 P phagosome-lysosome fusion involved in apoptotic cell clearance
Transcript
Level		FPKM:18.12 TPM:18.22
ORF EntryO_BomoSK12896_5prime_partial:A_BomoSK_comp13119_c0_seq1
Sequence
(Nucleotide)
TGTCAAACAGATGACTGTACATTCGGGGTATCCGCTTTGAAATTACGTTTTATACTGAAA
AACAGTACGGGTCTTAAAATGGCGACCCAAGTGCAGGCTTTGTATGACTTCACTGGTGAG
CCTGGCACCACAGAGATGTCCATAACTTGTGGAGAGGTGCTCACACTGCTCAACACAGAA
ATCGGAGAAGGCTGGTGGGAAGGAAAAAAATCTAATGGAGAAACTGGTCTATTTCCTGCT
GCATATGTCAGAAAACTGACACCAGAAGAATCAATTCAAACTAAAGCTGCTCCTCCAGCA
CCTAGATATGATCAAGCAGCAGATGACTGGGGCGAACAACACTACAGTGCAGGAGATAAC
AATTACCAAAGAGGAGTTTCGCATGAAGATGGCTGGGATGATGACTGGGAAGATGATACA
TACTCAGAGATAGGACCAGCCCAGCAACAAAACAAGACATCGCAGTACAACCAGCAATCA
TCCATTGTGATTCCCGGTATGCCTATTAATGATTATAATCAACACATAGATGACACATCT
TCAAATTATAGCTCATCAGTGGGCACAGTTAGAAAAAACAAATTTGCACCATCTTCAAAG
ATTAGTGGAGAAAGCTACCTGCTGGCAACCCTTAATGTAGAAGTACCAGACTCTGAAAAG
GTCTACATTATCCAAGATGAAGATGGATATATTTGGTCCCCAATTACTCAGCCATATATT
GTGACTGTGGCCTCTCCAAAAAAGGAATCTAAATTCAAAGGGATCAAGAGTTTTATAGCC
TATCAACTGACTCCTTCATTCAATAATATTCAAGTGTCCAGGAGATACAAACACTTTGAC
TGGCTCCATGAGAGACTACAAGAAAAGTTCACACTTATTCCAATCCCCCCTCTGCCTGAC
AAACAGATATCTGGAAGATATGATGAGCAACTAATCGAACGCAGGCGAGTTCAGCTCCAA
GAGTTTGTAGATTGGATGTGCAAGCACCCTGTGCTCTCCAGAAGCGAGGTTTGGCAACAC
TTCTTAACATGTACTGATGAAAAGAGATGGAAAGCTGGTAAAAGGCAAGCTGAAAAAGAT
AATTTGCTAGGTCTAAATTATTGTGTTTCACTAGTGGTACCTGAGAAAGCATTATTGCAA
TCACAAGTTGATCATATCACAGAACAGTGCCACACTTTCATTAACAGTGTCGACACAGCC
ATCAAGTCTGTGTCTAGCATGTGCATTGTGCAAACAAAACGTTTCCAAGGACCATACAAG
AGTGACTGCCAGAAAATAGGAGAAGCATTTTATAGTCTTGGCAATGCCTTAAGCTTGGAT
GAAGGTACCATAGTATCAACATCTAAGCTGACTTCAGCTATTAAAATGACAGGTGGTGTC
TACATTGATATTGGTAGGATGTATGATGAACAACCGAAGTATGATTGGGAGCCACTGGGT
GATAAATTTCATTTATACAAAGGAATTGCAGCTAGTTTTCCTGATGTCCTGGCCAATCAT
AAGGGTGCAGTGCAAAAGAAAAGAGAGTGTGAAAGACTGACTGCTGAAAACAAAATGGAG
GTTGCACAATTAAATGAAGTCTTGAGAAGGACCGATGTTATATCATATGCGCTTCTTGCC
GAAATCAACCATTTCAAATCAGAACGGACTGTTGATATAAAAGCCACCATGCAAAAATTC
TTGAAGCAACAAATCAACTTTTACAAGAAAATAGTAGATAAGTTGGAAACCACGCTAAGA
TACTATGATGATTAGATTTAACTTAGGAATTGATATTGAATCTAATATAAATTGTATCAA
GAAGTTTTGAATTGGAAAATTTATGGGTGTTCAGTATTTGATTATGAATATTTTGTAGAA
GTCAATTTTCACCAAAAAACACAATATGTATCTTGGAATTTCTAGAAATTTGGAATTTGA
TTCTAATTTACTACATAAAACATAGCATACTACGCAAGCTAAATAAATCTGAACATTATT
ATAAATGAATTTATGATGTGATGATATTTCGGACTGAACGTAAACTATATTATGATTATT
CTGTTTTGATGTAGTTTTATTTTTACAAATCGAAAAATAACTTGTAAATATTTTATGAAG
TCTAGTTTTTTTTTGAACATGGTGCATTATATCTATCTATTTTTTTATTTACACTATATT
TGTGGATCAATTCTTTTGAAATGTCTTGTTGTATATTTATAGTAATCGTTGTACTATATT
CCACTTTTGTAAGGTAGTTTAGG
(2243 bp)

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